Showing : illumina • reset
0
votes
2
replies
2.3k
views
Reading IDAT files from Illumina HumanMethylation450 BeadChip with beadarray
beadarray illumina methylation microarray
updated 10.0 years ago by 21k • written 10.0 years ago by • 0
11
votes
5
replies
2.9k
views
Why is the "detection" value given by lumidat the inverse (i.e. 1-x) of the "detection_pval" given by GenomeStudio?
lumidat idat microarray illumina
updated 10.1 years ago by ▴ 400 • written 10.1 years ago by ▴ 30
0
votes
0
replies
1.7k
views
minfi v1.14 through champ: read.450k error with file path name
minfi champ illumina 450k
10.1 years ago jeroen • 0
0
votes
0
replies
1.4k
views
WG6 microarray version 2 and 3, reading in txt file from two platforms
limma illumina microarray normalization readillumina
10.2 years ago kanacska ▴ 10
3
votes
6
replies
3.0k
views
How to get a list of differentialy expressed genes with data from Illumina array?
limma illumina microarray lmfit differential gene expression
updated 10.2 years ago by 68k • written 10.2 years ago by ▴ 10
18
votes
37
replies
18k
views
Correct construction of design matrix in limma for multiple contrasts for gene expression profiling
limma illumina differential gene expression multiple comparisons design matrix
10.3 years ago • updated 10.2 years ago svlachavas ▴ 840
0
votes
6
replies
5.1k
views
How to normalize in R Illumina HumanHT-12 V3.0 expression beadchip data
illumina normalization microarray
updated 10.2 years ago by ★ 1.1k • written 10.2 years ago by ▴ 10
0
votes
2
replies
6.4k
views
How to read bgx files in R
microarray annotation illumina
10.2 years ago kanacska ▴ 10
4
votes
5
replies
3.4k
views
Is it sensable to use p-value detection in illumina bead array as present, absent or marginal call
illumina pvalue
updated 10.3 years ago by ▴ 840 • written 10.3 years ago by ▴ 260
2
votes
2
replies
2.1k
views
Annotation problems regarding quality information for Illumina HumanHT-12 v4-illuminaHumanv4.db
illumina human ht-12 v4 illuminahumanv4.db filtering on probe annotation illumina
updated 10.3 years ago by ★ 6.6k • written 10.3 years ago by ▴ 840
0
votes
7
replies
2.2k
views
getting error in processSwathData command from the beadarray package
microarray beadarray illumina
updated 10.5 years ago by ★ 6.6k • written 10.6 years ago by • 0
0
votes
2
replies
1.6k
views
ShortRead summary stats
shortread illumina
10.5 years ago danova_fr ▴ 20
1
vote
7
replies
6.7k
views
convert fastq file to fasta using shortread package
illumina shortread
updated 10.6 years ago by 25k • written 10.6 years ago by • 0
1
vote
5
replies
2.4k
views
CRLMM on Illumina Human1Mv1_C chips
crlmm illumina beadarraysnp
updated 10.6 years ago by ▴ 1000 • written 10.6 years ago by ▴ 40
0
votes
0
replies
2.1k
views
Any alternative to GenomeStudio to analyze Illumina VeraCode arrays? Is Beadarray an option?
microarray beadarray Illumina Veracode
10.7 years ago lacion • 0
0
votes
1
reply
1.9k
views
Error regarding installation and loading of "Lumi" Package
software error microarray illumina
updated 10.7 years ago by ★ 13k • written 10.7 years ago by ▴ 10
0
votes
6
replies
1.7k
views
Getting CDS positioning for IlluminaHumanv4 annotations
illumina annotation
10.8 years ago Sylvain Foisy ▴ 80
4
votes
2
replies
5.2k
views
gene annotation of Illumina HumanWG-6 v3.0 expression beadchip
illumina
updated 10.9 years ago by 68k • written 10.9 years ago by ▴ 100
1
vote
2
replies
1.9k
views
minfi package QC report error?
minfi methylation illumina
11.0 years ago Brian Smith ▴ 120
0
votes
6
replies
2.7k
views
Illumina bead array analysis
illumina beadarray
updated 2.6 years ago by ★ 1.1k • written 11.0 years ago by • 0
0
votes
2
replies
2.3k
views
Help resovling"Error in lm.fit" with 'dmpFinder' function in minfi
minfi minfidata illumina methylation dmpfinder
updated 11.0 years ago by 68k • written 11.1 years ago by • 0
71 results • Page 2 of 2
Recent ...
Replies
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 4.9k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 4.9k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Comment: R course in Boston December 19-20 by eja.gaasa2e.r.m • 0
The upcoming XLSolutions R course in Boston on December 19 20 is a great opportunity to enhance your data skills. Whether you re a beginner…
Answer: Gatins Set error by James W. MacDonald 68k
`GatingSet` isn't a function in `flowCore`. It is however in `flowWorkspace`, which you would need to load first.
Answer: How to model DE for RNA-seq in concordant monozygotic twins? by Gordon Smyth 53k
Your question is more about science than it is about software syntax, and I can't give advice about how to conduct a scientific analysis, n…
Votes
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Awards • All
Popular Question to Gordon Smyth 53k
Popular Question to shepherl 4.2k
Popular Question to Joseph • 0
Popular Question to zhe ▴ 20
Popular Question to Natalia • 0
Locations • All
Seattle, WA, United States, 2 hours ago
Pittsburgh, United States, 2 hours ago
WEHI, Melbourne, Australia, 3 hours ago
Germany, 3 hours ago
Spain, 4 hours ago
Traffic: 586 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6