Showing : infrastructure • reset
0
votes
0
replies
964
views
News: Single Package Builder / New Package Submission
new package build machines infrastructure News
5.3 years ago shepherl 4.2k
1
vote
3
replies
3.4k
views
deseq2 DESeqDataSet size when saved
deseq2 infrastructure deseqdataset importing
updated 7.0 years ago by 43k • written 7.0 years ago by • 0
4
votes
1
reply
3.0k
views
News: Bioconductor git transition BETA phase starts now.
git svn infrastructure bioconductor News
8.2 years ago nitesh.turaga ▴ 140
0
votes
1
reply
1.1k
views
The bioconductor.org main website will be down for a brief period for maintenance. Starting approximately 7:45 am EST. Should be back up around 8:00 …
infrastructure
8.7 years ago gregory.wargula ▴ 30
0
votes
7
replies
2.9k
views
Bioconductor 2.6 is released
Sequencing Microarray Visualization Infrastructure PROcess beadarray keggorthology eisa
updated 9.1 years ago by • 0 • written 15.4 years ago by ★ 1.6k
1
vote
0
replies
1.9k
views
News: BioCAsia, 4th November 2016, Brisbane, Australia
conference transcription epigenomics visualization infrastructure News
9.2 years ago Matthew Ritchie ▴ 1000
3
votes
0
replies
2.1k
views
News: BioCAsia, 8 Sept 2015, Tokyo
sequencing transcription epigenomics visualization infrastructure News
10.3 years ago • updated 10.1 years ago Matthew Ritchie ▴ 1000
0
votes
5
replies
4.0k
views
Running the GSEA algorithm
Infrastructure PGSEA GSEABase SeqGSEA Infrastructure PGSEA GSEABase SeqGSEA
updated 11.5 years ago by ★ 1.3k • written 11.5 years ago by ▴ 680
0
votes
0
replies
2.1k
views
job: head of core facility bioinformatics (Mainz/Germany)
Epigenetics Infrastructure Epigenetics Infrastructure
11.7 years ago Holger Klein ▴ 20
0
votes
0
replies
1.6k
views
Bioinformatics Facility Director Position at UC Riverside
Proteomics Infrastructure Proteomics Infrastructure
12.0 years ago Thomas Girke ★ 1.7k
0
votes
0
replies
1.4k
views
Reopening of Computational Biologist position at Genentech
Infrastructure PROcess Infrastructure PROcess
12.1 years ago Michael Lawrence ★ 11k
0
votes
2
replies
1.3k
views
*Ranges paper published
Infrastructure IRanges GenomicFeatures GenomicRanges Infrastructure IRanges GenomicFeatures
updated 12.1 years ago by ★ 4.2k • written 12.1 years ago by ★ 11k
0
votes
4
replies
2.2k
views
DexSeq extracols option
RNASeq Microarray Genetics Annotation Normalization Infrastructure Cancer probe limma
updated 12.1 years ago by ★ 1.9k • written 12.1 years ago by ▴ 40
0
votes
1
reply
1.3k
views
convert IDs in a data frame?
GO Infrastructure Cancer GO Infrastructure Cancer
updated 12.2 years ago by ★ 7.2k • written 12.2 years ago by 16k
0
votes
5
replies
5.7k
views
Finding mismatches between reads and reference sequence
Infrastructure Cancer BSgenome BSgenome Infrastructure Cancer BSgenome BSgenome
updated 12.5 years ago by ▴ 30 • written 12.5 years ago by 16k
0
votes
0
replies
1.9k
views
Bioconductor Digest, Vol 121, Issue 29
miRNA Annotation Normalization Visualization Clustering Infrastructure Cancer BSgenome vsn
12.5 years ago Matthew Thornton ▴ 380
0
votes
2
replies
3.0k
views
[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure Cancer Biobase tkWidgets globaltest BiocInstaller BiocGenerics Cancer
updated 12.5 years ago by 25k • written 12.5 years ago by ▴ 40
0
votes
0
replies
1.5k
views
Job: Bioinformatician (postdoc, indefinite) Pirbright Institute
Infrastructure Infrastructure
12.5 years ago Jan T Kim ▴ 50
0
votes
10
replies
3.0k
views
assignChromosomeRegion in 2.6.0 ChIPpeakAnno
Microarray Annotation GO Network Regression Survival Infrastructure Escherichia coli ROC
12.5 years ago Julie Zhu ★ 4.3k
0
votes
2
replies
1.9k
views
GSEABase error parsing msigdb_v3.1.xml
GO Infrastructure hgu95av2 Biobase annotate graph Category AnnotationDbi BiocGenerics GO
updated 12.6 years ago by 25k • written 12.6 years ago by ▴ 80
0
votes
0
replies
1.5k
views
Open computational biologist position at Genentech
Infrastructure Infrastructure
12.7 years ago Michael Lawrence ★ 11k
0
votes
0
replies
1.4k
views
Bioinformatics Position Opening
Proteomics Infrastructure Proteomics Infrastructure
12.7 years ago Thomas Girke ★ 1.7k
0
votes
0
replies
1.9k
views
Bioinformatician Job at Pirbright Institute
Genetics Infrastructure Genetics Infrastructure
12.8 years ago Jan T Kim ▴ 50
0
votes
5
replies
1.4k
views
pooling for parallel hierarchical operations
Infrastructure Infrastructure
updated 12.8 years ago by 25k • written 12.8 years ago by ★ 11k
0
votes
2
replies
2.8k
views
counting RNA-seq reads in R/BioC
GO Infrastructure Rsubread easyRNASeq GO Infrastructure Rsubread easyRNASeq
updated 13.0 years ago by ★ 6.8k • written 13.0 years ago by ▴ 880
0
votes
8
replies
2.4k
views
good news and bad news
Infrastructure Cancer IRanges GenomicRanges Infrastructure Cancer IRanges GenomicRanges
updated 13.1 years ago by ★ 13k • written 13.1 years ago by 16k
0
votes
0
replies
1.7k
views
Bioinformatics Academic Coordinator Job Posting
Proteomics Infrastructure Proteomics Infrastructure
13.2 years ago Guest User ★ 13k
0
votes
0
replies
1.1k
views
2012 Bioconductor European Developers' Workshop - annoucement
Proteomics Infrastructure Proteomics Infrastructure
13.3 years ago Mark Robinson ▴ 880
0
votes
0
replies
1.4k
views
Open Position - Academic Coordinator for Bioinformatics
Proteomics Infrastructure Proteomics Infrastructure
13.4 years ago Thomas Girke ★ 1.7k
0
votes
0
replies
1.5k
views
2 more Job Announcements
Genetics Infrastructure Genetics Infrastructure
13.5 years ago Jenny Drnevich ★ 2.0k
0
votes
0
replies
1.5k
views
[Job] Bioinformatician-NGS (Vienna, Austria)
Sequencing Infrastructure Sequencing Infrastructure
13.8 years ago Ido M. Tamir ▴ 150
0
votes
2
replies
1.3k
views
"internal equal" overlap mode for GRangesList
Infrastructure Infrastructure
updated 13.9 years ago by ★ 1.6k • written 13.9 years ago by ★ 11k
0
votes
0
replies
1.7k
views
illuminaHumanv4 mappings
Infrastructure Cancer Homo sapiens probe AnnotationDbi ASSIGN Infrastructure Cancer probe
14.0 years ago Mark Cowley ▴ 910
0
votes
2
replies
1.8k
views
GGtools and GGBase installation problems
Infrastructure GUI Ruuid GGtools GGBase Infrastructure GUI Ruuid GGtools GGBase
updated 14.6 years ago by 6.7k • written 14.6 years ago by ▴ 460
0
votes
5
replies
1.7k
views
A code kata: evening-out *Ranges ends.
Infrastructure Cancer IRanges Infrastructure Cancer IRanges
15.1 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
1.0k
views
NOTE: bioconductor.org system maintenance; planned downtime 12pm-1pm PDT Friday 9/18
Infrastructure Infrastructure
16.0 years ago Patrick Aboyoun ★ 1.6k
0
votes
0
replies
1.2k
views
Research positions available in neuroproteomics
Proteomics Infrastructure Proteomics Infrastructure
16.5 years ago Abhilash Venu ▴ 340
0
votes
0
replies
1.6k
views
GSEA to discover co-regulated genes
Transcription Annotation Pathways Infrastructure probe convert GSEABase Transcription
16.6 years ago Paul Geeleher ★ 1.3k
0
votes
1
reply
1.1k
views
Project Enquiry!
Infrastructure Infrastructure
17.1 years ago Kat ▴ 20
0
votes
0
replies
1.1k
views
Staff Position at EBI: Computational Scientist / Bioconductor
Infrastructure Infrastructure
17.1 years ago Wolfgang Huber ★ 13k
0
votes
1
reply
1.7k
views
GSEABase error in parsing msigdb_v2.5.xml
GO Infrastructure hgu95av2 Biobase Ruuid AnnotationDbi GO Infrastructure hgu95av2 Biobase
updated 17.4 years ago by 25k • written 17.4 years ago by ▴ 130
1
vote
4
replies
5.5k
views
Affymetrix Human Gene 1.0 ST Array
Infrastructure cdf probe affy Infrastructure cdf probe affy
17.4 years ago Hans-Ulrich Klein ▴ 330
0
votes
1
reply
1.6k
views
BioC 2.2 now available
SNP Microarray Genetics Annotation Preprocessing Bayesian Clustering Infrastructure Cancer
updated 17.4 years ago by ★ 1.6k • written 17.4 years ago by 25k
0
votes
0
replies
1.0k
views
To biomaRt users: Major downtime March 7th 4pm - March 8th 6pm
Infrastructure biomaRt Infrastructure biomaRt
17.5 years ago Steffen ▴ 500
0
votes
0
replies
1.4k
views
biocep project - R for the Web and the Virtual R Workbench
Infrastructure PROcess Infrastructure PROcess
17.8 years ago kchine@ebi.ac.uk ▴ 10
0
votes
0
replies
794
views
question regarding lumiHumanV1SUMFUNC and lumiRatV1SUMFUNC in lumiHumanV1 and lumiRatV1, respectively
Annotation Infrastructure Cancer Annotation Infrastructure Cancer
18.1 years ago Seth Falcon ★ 7.4k
0
votes
0
replies
1.3k
views
2x2 factorial with dye effect, limma design
Microarray Infrastructure Microarray Infrastructure
18.7 years ago Gordon Smyth 53k
0
votes
0
replies
1.5k
views
BioC 1.9 is released!
BiocViews SNP Microarray Annotation Normalization Visualization Network Infrastructure SNP
19.0 years ago Seth Falcon ★ 7.4k
0
votes
1
reply
1.4k
views
Newbie 'rflowcyt' question; problem loading facscan256.fcs
Survival Infrastructure Cancer hexbin prada rfcdmin rflowcyt Survival Infrastructure
updated 19.3 years ago by ★ 7.4k • written 19.3 years ago by ▴ 80
0
votes
5
replies
2.2k
views
extracting interactions between members of the KEGG pathways
Pathways Infrastructure Cancer graph Pathways Infrastructure Cancer graph
updated 19.5 years ago by ★ 5.5k • written 19.5 years ago by ▴ 90
57 results • Page 1 of 2
Recent ...
Replies
Comment: Merge multiple genomic intervals if overlapping more than xx percents by Lime • 0
I think this site is very useful if you are doing similar work (genomic intervals, peaks, ChIP-seq, etc.) because: There is sample code tha…
Comment: How to do simple Fisher' exact test for overlapped genomic interval in R? by Mina • 0
If I were you, I would do the following to make sure: Collect the overlapping regions into two BED files or two datasets. Use bedtools merg…
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0
Apologies for not clarifying earlier, you're right: it is a PCA, not an MDS. In local machine, computing the MDS takes quite a long time, P…
Answer: replace cat with message in glmTreat when lfc = 0 by Gordon Smyth 53k
Yes, I agree that the message should be a `message` rather than `cat` output, and the message is perhaps not needed at all, because anyone …
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k
How did you make this plot? I've never seen an MDS plot from limma/edgeR with axis scale going from -200 to 200. Personally, I would go ah…
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Awards • All
Popular Question to Hervé Pagès 16k
Teacher to Gordon Smyth 53k
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Marek Gierlinski ▴ 30
Popular Question to Kateřina • 0
Locations • All
WEHI, Melbourne, Australia, 2 minutes ago
Chile, 17 minutes ago
Chile, 19 minutes ago
london, 26 minutes ago
Germany, 29 minutes ago
Traffic: 811 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6