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isoform
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1
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5
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1.2k
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Can DEXSeq ouput be used directly as an input for IsoformSwitchAnalyzeR
isoformswitchanalyzer
isoform
differential isoform usage
written 5.4 years ago by
A
▴ 40
0
votes
2
replies
569
views
Does the knock down cause transcriptome-wide differences in isoform usage for Pac-Bio data?
pacbio
isoform
written 17 months ago by
lhaiyan3
• 0
0
votes
0
replies
375
views
IsoformSwitchAnalyzer
Isoform
IsoformSwitchAnalyzeR
11 months ago
Craig
• 0
0
votes
5
replies
2.2k
views
Can Differential Isoform expression analysis can be performed using DESeq2 package
RNASeqData
isoform
DESeq2
2.0 years ago • updated 23 months ago
priyanka.m
• 0
0
votes
0
replies
1.3k
views
HISAT2/StringTie/Ballgown for Novel Transcript Isoform Differential Expression
isoform
RNA-seq
hisat2
stringtie
ballgown
3.6 years ago
ra711
• 0
0
votes
5
replies
1.3k
views
isoform data, deep sequencing and voom
isoform
deep sequencing
voom
updated 3.7 years ago by
Gordon Smyth
50k • written 3.7 years ago by
Ina Hoeschele
▴ 620
0
votes
4
replies
1.1k
views
mean-variance trend plots with isoform and gene-level data from tximport
tximport
isoform
voom
updated 3.8 years ago by
Gordon Smyth
50k • written 3.8 years ago by
Ina Hoeschele
▴ 620
1
vote
4
replies
1.2k
views
Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer
Isoform
limma
IsoformSwitchAnalyzeR
updated 4.6 years ago by
k.vitting.seerup
▴ 120 • written 4.6 years ago by
asmita
• 0
1
vote
4
replies
1.1k
views
gene Isoforms quantification using RNA-seq data
gene
isoform
quantification
rna-seq
updated 4.7 years ago by
swbarnes2
★ 1.3k • written 4.7 years ago by
angel.campos
• 0
0
votes
0
replies
955
views
IsoformSwitchAnalyzeR error input
kallisto
differential isoform usage
isoform
6.5 years ago
ilyco
• 0
10 results • Page
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Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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