Bioconductor Isoform

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2.2k

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RNASeqData isoform DESeq2

2.0 years ago • updated 23 months ago priyanka.m • 0

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1.3k

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isoform RNA-seq hisat2 stringtie ballgown

3.6 years ago ra711 • 0

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1.3k

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isoform deep sequencing voom

updated 3.7 years ago by Gordon Smyth 50k • written 3.7 years ago by Ina Hoeschele ▴ 620

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1.2k

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cancer Isoform limma IsoformSwitchAnalyzeR

updated 4.6 years ago by k.vitting.seerup ▴ 120 • written 4.6 years ago by asmita • 0

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1.2k

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isoformswitchanalyzer isoform differential isoform usage

written 5.4 years ago by A ▴ 40

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1.1k

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gene isoform quantification rna-seq

updated 4.7 years ago by swbarnes2 ★ 1.3k • written 4.7 years ago by angel.campos • 0

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1.1k

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tximport isoform voom

updated 3.8 years ago by Gordon Smyth 50k • written 3.8 years ago by Ina Hoeschele ▴ 620

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955

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kallisto differential isoform usage isoform

6.5 years ago ilyco • 0

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569

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pacbio isoform

written 17 months ago by lhaiyan3 • 0

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375

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Isoform IsoformSwitchAnalyzeR

11 months ago Craig • 0

10 results • Page 1 of 1

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Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k

Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

In that case both time and treatment are identical things, so choose one and go with it.

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Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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