Showing : limmagui • reset
6
votes
4
replies
986
views
Limma prametrization
limm MathematicalBiology limmaGUI StatisticalMethod
2.3 years ago Giovanni • 0
3
votes
6
replies
6.6k
views
Unable to install "limma" package on RStudio
Bioconductor limma limmaGUI
2.2 years ago jaydengitt • 0
2
votes
5
replies
1.7k
views
NA coefficients values for samples with all zeros
limmagui proteomics
8.4 years ago vedran.franke • 0
2
votes
6
replies
1.1k
views
Limma beta coefficient confidence intervals
limma limmaGUI beta
22 months ago fluentin44 • 0
1
vote
2
replies
966
views
Limma adj.p.value the same for many different p.values
limmaGUI limma adj.p.value StatisticalMethod
19 months ago walkerrh95 • 0
1
vote
4
replies
409
views
limma design model for categorical variable
DNAMethylation limmaGUI biostatistics limma
updated 11 weeks ago by 50k • written 12 weeks ago by ▴ 10
1
vote
1
reply
791
views
Weird distribution of p-values, with no significant adjusted p-values?
fdr limmaGUI p-values limma
updated 19 months ago by 65k • written 19 months ago by • 0
1
vote
5
replies
2.8k
views
Using Limma for proteomics (2D DIGE) datasets
Proteomics limma impute limmaGUI Proteomics limma impute limmaGUI
updated 8.8 years ago by • 0 • written 14.6 years ago by ▴ 60
1
vote
3
replies
3.5k
views
Limma: correct calculation of B statistics (log odds)
Microarray Genetics limma limmaGUI Microarray Genetics limma limmaGUI
updated 18.0 years ago by ★ 1.9k • written 18.0 years ago by 50k
1
vote
5
replies
1.0k
views
Does voom normalization quantile create difference in DGE genes when distribution of patients is similar (no big differences in quantiles)?
limmaGUI normalization limma voom Normalization
updated 10 months ago by 50k • written 10 months ago by • 0
1
vote
3
replies
347
views
Why is my gene not significantly differentially expressed?
limmaGUI edgeR limma
updated 19 days ago by 50k • written 24 days ago by • 0
0
votes
0
replies
997
views
Re: LimmaGUI
Genetics limma limmaGUI Genetics limma limmaGUI
20.2 years ago James Wettenhall ▴ 1000
0
votes
1
reply
791
views
Setting the spacing between duplicates in limmaGUI
limmaGUI limmaGUI
updated 20.6 years ago by 50k • written 20.6 years ago by ▴ 80
0
votes
0
replies
782
views
limmaGUI problem
limma limmaGUI limma limmaGUI
20.1 years ago Ron Ophir ▴ 80
0
votes
1
reply
959
views
LimmaGUI
limmaGUI limmaGUI
updated 20.2 years ago by 65k • written 20.2 years ago by ▴ 100
0
votes
0
replies
1.1k
views
BioC GUI development
Microarray Genetics GUI affy limma affylmGUI limmaGUI Microarray Genetics GUI affy
20.4 years ago James Wettenhall ▴ 1000
0
votes
1
reply
1.5k
views
Analysis Interface Projects
limma limmaGUI limma limmaGUI
updated 20.7 years ago by ▴ 160 • written 20.7 years ago by ▴ 1000
0
votes
3
replies
2.2k
views
Limma: background correction. Use or ignore?
Microarray Cancer affy limma limmaGUI Microarray Cancer affy limma limmaGUI
updated 18.1 years ago by ★ 1.9k • written 18.1 years ago by 50k
0
votes
1
reply
799
views
limmaGUI and dupcor.series error
limmaGUI limmaGUI
updated 19.9 years ago by ▴ 1000 • written 19.9 years ago by ▴ 760
0
votes
0
replies
645
views
How to do normalization without backgroundsubtraction in limmaGUI or limma?
Normalization limma limmaGUI Normalization limma limmaGUI
20.6 years ago ying chen ▴ 30
0
votes
0
replies
795
views
limmaGUI & affylmGUI new features/fixes
Genetics Normalization limmaGUI Genetics Normalization limmaGUI
19.9 years ago James Wettenhall ▴ 1000
0
votes
0
replies
746
views
limmaGUI update
limma limmaGUI limma limmaGUI
19.9 years ago James Wettenhall ▴ 1000
0
votes
1
reply
1.1k
views
Re: Limma GUI exporting
Microarray limma affylmGUI limmaGUI Microarray limma affylmGUI limmaGUI
19.9 years ago James Wettenhall ▴ 1000
0
votes
2
replies
875
views
Problem loading files into limmaGUI
limma limmaGUI limma limmaGUI
updated 19.9 years ago by 50k • written 19.9 years ago by ▴ 10
0
votes
2
replies
1.3k
views
"limma" and "Imagene"
GUI limma limmaGUI GUI limma limmaGUI
updated 19.9 years ago by 50k • written 19.9 years ago by ▴ 50
0
votes
0
replies
866
views
limmaGUI_1.2.5 ImaGene fix
limmaGUI limmaGUI
19.9 years ago James Wettenhall ▴ 1000
0
votes
6
replies
1.4k
views
LimmaGUI Spot Quality
limmaGUI limmaGUI
updated 19.8 years ago by 50k • written 19.9 years ago by ▴ 160
0
votes
1
reply
905
views
limmaGUI and Agilent output files!
Microarray limmaGUI Microarray limmaGUI
updated 19.8 years ago by ▴ 1000 • written 19.8 years ago by ▴ 30
0
votes
0
replies
804
views
Re: limmaGUI and Agilent output files!
Microarray limmaGUI Microarray limmaGUI
19.8 years ago Elizabeth Brooke-Powell ▴ 160
0
votes
1
reply
848
views
LimmaGUI and limma
limma limmaGUI limma limmaGUI
updated 19.7 years ago by ▴ 1000 • written 19.7 years ago by ▴ 100
0
votes
0
replies
1.0k
views
Re: affylmGUI
Genetics affylmGUI limmaGUI convert Genetics affylmGUI limmaGUI convert
19.9 years ago James Wettenhall ▴ 1000
0
votes
2
replies
888
views
How to do normalization without background subtraction in limmaGUI or limma?
Normalization limmaGUI Normalization limmaGUI
updated 20.6 years ago by 50k • written 20.6 years ago by ▴ 40
0
votes
1
reply
1.6k
views
statistics for differential expression: adjusted p-values<0.05 BUT negative B-odds?
Normalization limma limmaGUI Normalization limma limmaGUI
updated 15.5 years ago by ▴ 320 • written 15.5 years ago by ▴ 90
0
votes
1
reply
881
views
problem in limmaGUI with Heat Diagram
limma limmaGUI limma limmaGUI
updated 19.4 years ago by ▴ 1000 • written 19.4 years ago by ▴ 50
0
votes
0
replies
748
views
gcrma in affylmGUI
gcrma affylmGUI limmaGUI gcrma affylmGUI limmaGUI
19.9 years ago James Wettenhall ▴ 1000
0
votes
0
replies
759
views
Limma and limmaGUI with Imagene files, problems/bugs report
Normalization limma limmaGUI ASSIGN Normalization limma limmaGUI ASSIGN
19.4 years ago Breuk102 ▴ 50
0
votes
2
replies
954
views
Limma and limmaGUI with Imagene files, problems/bugs report
limma limmaGUI ASSIGN limma limmaGUI ASSIGN
updated 19.4 years ago by 50k • written 19.4 years ago by ▴ 50
0
votes
0
replies
1.2k
views
Problem with limmaGui loading- "Tcl/Tk Extension(s) Not Found"
limmaGUI limmaGUI
19.1 years ago Noam Drigues ▴ 10
0
votes
1
reply
780
views
Bioconductor or R courses
GO limma limmaGUI GO limma limmaGUI
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ▴ 170
0
votes
0
replies
651
views
LimmaGUI discards spots with no signal on one channel??
limmaGUI limmaGUI
19.1 years ago J.delasHeras@ed.ac.uk ★ 1.9k
0
votes
0
replies
891
views
MA plot (using fitted M values)
limmaGUI limmaGUI
19.1 years ago Choon Wei Wee ▴ 10
0
votes
4
replies
1.0k
views
LimmaGUI discards spots with no signal on one channel?
limma limmaGUI limma limmaGUI
19.1 years ago Gordon Smyth 50k
0
votes
0
replies
524
views
Help with Duplicates
limmaGUI limmaGUI
19.0 years ago Brooke-Powell, Elizabeth ▴ 170
0
votes
9
replies
1.9k
views
Getting LimmaGUI to run
tkWidgets widgetTools limmaGUI widgetInvoke tkWidgets widgetTools limmaGUI widgetInvoke
18.8 years ago chris umbricht ▴ 110
0
votes
2
replies
854
views
Fwd: Getting LimmaGUI to run
limmaGUI limmaGUI
updated 18.8 years ago by ▴ 40 • written 18.8 years ago by ▴ 110
0
votes
3
replies
1.2k
views
spot filtering
limma limmaGUI limma limmaGUI
updated 18.8 years ago by ★ 3.4k • written 18.8 years ago by ▴ 170
0
votes
0
replies
1.3k
views
NA values
Normalization Cancer limma gcrma affyPLM limmaGUI plier Normalization Cancer limma gcrma
18.8 years ago Brooke-Powell, Elizabeth ▴ 170
0
votes
0
replies
855
views
spot filtering
limma limmaGUI limma limmaGUI
18.8 years ago Gordon Smyth 50k
0
votes
0
replies
678
views
LimmaGUI Error
Normalization GO limmaGUI Normalization GO limmaGUI
18.8 years ago Brooke-Powell, Elizabeth ▴ 170
0
votes
0
replies
918
views
limmaGUI & affylmGUI wizards for Windows & bug fixes
Microarray Genetics cdf affylmGUI limmaGUI Microarray Genetics cdf affylmGUI limmaGUI
19.9 years ago James Wettenhall ▴ 1000
50 results • Page 1 of 1
Recent ...
Replies
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
Awards • All
Popular Question to Gordon Smyth 50k
Popular Question to Zainab • 0
Popular Question to Theo ▴ 10
Popular Question to gene_bioconductor ▴ 10
Popular Question to rohitsatyam102 ▴ 20
Locations • All
India, 7 minutes ago
Ireland, 23 minutes ago
France, 30 minutes ago
United States, 1 hour ago
United States, 1 hour ago
Traffic: 544 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6