Biostar Linux

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DEXSEq Linux

updated 3.3 years ago by Alejandro Reyes ★ 1.8k • written 3.3 years ago by justinkablan225 • 0

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biocparallel oligo rma linux parallel

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updated 4.7 years ago by Mike Smith ★ 5.7k • written 4.9 years ago by maxime.fortin • 0

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updated 7.1 years ago by Hervé Pagès 15k • written 7.1 years ago by guilherme • 0

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linux R server

updated 7.9 years ago by James W. MacDonald 60k • written 7.9 years ago by Matthew McCormack ▴ 180

14 results • Page 1 of 1

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Comment: unable to install.packages("spatialLIBD") by Leonardo Collado Torres ▴ 980

All the solutions Lori proposed are valid. The `STexampleData` package I think has only 1 of our samples (see https://bioconductor.org/pack…

Answer: how to use Rsamtools to parse extra fields from STAR alignment by Martin Morgan 25k

The 'extra columns' are called 'tags' in the SAM specification. Following the documentation `?ScanBamParam` you should add `tag = "NH"`. Se…

Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip by Delta._.43 ▴ 10

Yes, indeed it is the same error. Here are the first few lines of my count file. ``` "ENSG00000000003":"001" 0 "ENSG00000000003":"002" 1032…

Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip by Alejandro Reyes ★ 1.8k

Thanks for your detail post. I think this might be related to this issue here: https://support.bioconductor.org/p/9143537/ Just to verify…

Answer: spot- vs cell-level data access by Leonardo Collado Torres ▴ 980

Hi, The `SingleCellExperiment` object you can download with `fetch_data(type = "sce")` pre-dates the creation of `SpatialExperiment`. No…

Votes

Comment: unable to install.packages("spatialLIBD")

error running UniProt.ws

Answer: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU

C: No genes found in universe : goana error

A: No genes found in universe : goana error

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Popular Question to Alejandro Reyes ★ 1.8k

Popular Question to Leonardo Collado Torres ▴ 980

Scholar to ATpoint ★ 1.4k

Scholar to voogd.o ▴ 10