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log2FC
•
reset
1
vote
13
replies
1.1k
views
Ranking the GSEA Results
fgsea
log2FC
4 months ago
V_Vibes
• 0
1
vote
1
reply
359
views
DESeq2 - vst() - log2FC - no replicates
DESeq2
log2FC
vst()
updated 5 months ago by
ATpoint
★ 4.5k • written 5 months ago by
lifeonmars
• 0
0
votes
2
replies
829
views
Why my log2fcs are too high?
DESeq2
SingleCell
log2FC
19 months ago
paria.alipour
• 0
1
vote
4
replies
1.9k
views
Inverted Log2FC values after DEseq2 analysis
DESeq2
Log2FC
RNASeqData
22 months ago
Iwan
• 0
0
votes
1
reply
902
views
Log2FC in LRT vs Wald in multifactorial design
DESeq2
LRT
multifactorial
up/down-reg
log2FC
updated 23 months ago by
James W. MacDonald
67k • written 23 months ago by
Laia
▴ 10
0
votes
4
replies
5.4k
views
Understanding the Log2FoldChange calculated with DESeq2 and according to formula log2(treated/control)
DESeq2
log2FC
2.2 years ago
User000
• 0
2
votes
4
replies
1.6k
views
pre-ranked GSEA or not?
log2FC
DESeq2
GSEA
voom
limma
updated 2.3 years ago by
Gordon Smyth
51k • written 2.3 years ago by
Yang Shi
▴ 10
1
vote
5
replies
2.8k
views
log2FC calculation in EdgeR
edger
log2FC
written 5.1 years ago by
matteo.buti
• 0
2
votes
4
replies
1.5k
views
Standard error of log2FC from DESeq in time series experiment
deseq2
log2fc
standard error
timecourse
updated 6.8 years ago by
ellascottgm
• 0 • written 6.8 years ago by
Verena
• 0
0
votes
3
replies
1.5k
views
disagreement between log2FoldChange and lfcMLE in DESeq2
deseq2
log2fc
shrinkage
updated 6.9 years ago by
Michael Love
42k • written 6.9 years ago by
aec
▴ 90
1
vote
3
replies
5.9k
views
log2 fold change calculation for DE gene analysis
deseq2
L2FC
log2fc
updated 7.3 years ago by
Michael Love
42k • written 7.3 years ago by
sup230
▴ 30
0
votes
2
replies
4.1k
views
DESEq2 log2FoldChange and lfcSE calculations
deseq2
log2fc
updated 8.1 years ago by
Michael Love
42k • written 8.1 years ago by
David R
▴ 90
2
votes
2
replies
2.2k
views
Can I calculate counts from the base mean and log2fc outputs of DESeq2? Also, can I calculate error for counts values from lfcse output?
deseq2
chipseq
counts
log2fc
error
updated 8.5 years ago by
Michael Love
42k • written 8.5 years ago by
robin.uchiyama
• 0
6
votes
8
replies
6.5k
views
Does limma calculate pvalues using log2 fold changes or with linear values?
limma
pvalue
log2fc
log2
updated 24 months ago by
James W. MacDonald
67k • written 8.6 years ago by
serpalma.v
▴ 60
1
vote
10
replies
6.2k
views
DESEQ2: apparently wrong log2(fold-change) calculation
deseq2
differential gene expression
log2fc
8.7 years ago
Osvaldo
▴ 40
1
vote
3
replies
2.5k
views
Log2 foldchange in DESeq2
deseq2
R
log2fc
updated 9.0 years ago by
Michael Love
42k • written 9.0 years ago by
Sushant Pawar
• 0
1
vote
5
replies
2.0k
views
Log2FC values very small with SCAN
scan
Log2FC
updated 9.3 years ago by
Gordon Smyth
51k • written 9.4 years ago by
Vani
▴ 20
17 results • Page
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Answer: Unlocking Potential: NURS FPX Strategies and Insights
by
efsane_kral2000
• 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights
by
efsane_kral2000
• 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR
by
Gordon Smyth
51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data
by
Melisa Tecik
• 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data
by
James W. MacDonald
67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
Votes
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
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