Bioconductor Log2FC

Showing : log2FC • reset

vote

replies

2.3k

views

fgsea log2FC

16 months ago • updated 15 months ago V_Vibes • 0

vote

728

views

DESeq2 log2FC vst()

updated 16 months ago by ATpoint ★ 5.0k • written 16 months ago by lifeonmars • 0

votes

replies

1.1k

views

DESeq2 SingleCell log2FC

2.5 years ago paria.alipour • 0

vote

replies

2.5k

views

DESeq2 Log2FC RNASeqData

2.8 years ago Iwan • 0

votes

1.1k

views

DESeq2 LRT multifactorial up/down-reg log2FC

updated 2.9 years ago by James W. MacDonald 68k • written 2.9 years ago by Laia ▴ 10

votes

replies

6.7k

views

DESeq2 log2FC

3.1 years ago User000 • 0

votes

replies

2.1k

views

log2FC DESeq2 GSEA voom limma

updated 3.3 years ago by Gordon Smyth 53k • written 3.3 years ago by Yang Shi ▴ 10

vote

replies

3.6k

views

edger log2FC

written 6.0 years ago by matteo.buti • 0

votes

replies

1.8k

views

deseq2 log2fc standard error timecourse

updated 7.7 years ago by ellascottgm • 0 • written 7.7 years ago by Verena • 0

votes

replies

1.8k

views

deseq2 log2fc shrinkage

updated 7.9 years ago by Michael Love 43k • written 7.9 years ago by aec ▴ 90

vote

replies

6.9k

views

deseq2 L2FC log2fc

updated 8.2 years ago by Michael Love 43k • written 8.2 years ago by sup230 ▴ 30

votes

replies

4.5k

views

deseq2 log2fc

updated 9.0 years ago by Michael Love 43k • written 9.0 years ago by David R ▴ 90

votes

replies

2.6k

views

deseq2 chipseq counts log2fc error

updated 9.4 years ago by Michael Love 43k • written 9.4 years ago by robin.uchiyama • 0

votes

replies

7.6k

views

limma pvalue log2fc log2

updated 2.9 years ago by James W. MacDonald 68k • written 9.6 years ago by serpalma.v ▴ 60

vote

replies

6.6k

views

deseq2 differential gene expression log2fc

9.6 years ago Osvaldo ▴ 40

vote

replies

2.6k

views

deseq2 R log2fc

updated 9.9 years ago by Michael Love 43k • written 9.9 years ago by Sushant Pawar • 0

vote

replies

2.4k

views

scan Log2FC

updated 10.3 years ago by Gordon Smyth 53k • written 10.3 years ago by Vani ▴ 20

17 results • Page 1 of 1

Recent ...

Replies

Answer: DESeq2 for candidate gene analysis by Michael Love 43k

Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…

Comment: Join BOC Sciences at Drug Discovery Chemistry by teamardigen • 0

Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…

Votes

DESeq2 for candidate gene analysis

Join BOC Sciences at Drug Discovery Chemistry

Drug datasets for RNA-seq

Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Awards • All