Showing : meta-analysis • reset
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3
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1.1k
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Meta-analysis on RNA-seq data sets
meta-analysis sva Combat_Seq RNAseq
13 months ago Travis • 0
0
votes
1
reply
1.4k
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What does one-sided p-value in DESeq2 mean in biological terms?
one-sided nbinomWaldTest p-value meta-analysis DESeq2
updated 4.2 years ago by 43k • written 4.2 years ago by • 0
0
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11
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4.8k
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Remove NaN from a list or replace NaN with a value.
R meta-analysis
updated 4.2 years ago by • 0 • written 6.9 years ago by ▴ 10
0
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7
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2.1k
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Problem using load_raw() function in crossmeta R package
cross meta-analysis crossmeta
4.7 years ago michael.s • 0
3
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1
reply
772
views
Meta-Analysis: Start with counts?
meta-analysis
updated 6.4 years ago by ★ 29k • written 6.4 years ago by • 0
1
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2
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1.3k
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Meta-analysis of RNAseq data
RNAseq meta-analysis microarray public data sets
updated 6.7 years ago by ▴ 110 • written 6.7 years ago by ▴ 90
0
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3
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2.3k
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Algorithm for between and within microarray normalisation (for meta-analysis).
microarray meta-analysis gene expression
updated 6.8 years ago by 0 • written 9.3 years ago by ▴ 70
2
votes
1
reply
917
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how do meta-analysis with Na p-value of DESeq2 ?
deseq2 meta-analysis metaseq
updated 8.3 years ago by 43k • written 8.3 years ago by • 0
0
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0
replies
1.1k
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Meta-Analysis chip-seq data
chip-seq meta-analysis
8.4 years ago rezapanahi222 • 0
0
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0
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1.0k
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tools or package for meta-analysis of chip-seq result
chipseq meta-analysis
8.4 years ago rezapanahi222 • 0
2
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4
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2.1k
views
R package for Meta-Analysis of CHIP-Seq data
chipseq meta-analysis ubuntu
8.4 years ago rezapanahi222 • 0
6
votes
4
replies
3.8k
views
Meta-analysis of microarrays (and RNA-seq) data
meta-analysis
updated 8.5 years ago by ▴ 110 • written 8.5 years ago by ▴ 40
3
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6
replies
1.8k
views
Possible approach of compare/interpret RNA-Seq results with microarray gene expression describing the same phenotype
microarray rnaseq DEgenes meta-analysis limma
updated 8.7 years ago by ★ 29k • written 8.7 years ago by ▴ 840
0
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1
reply
1.4k
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meta analysis of p value data by metaseq package
rnaseq meta-analysis p values
8.8 years ago hassangiahi • 0
0
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1
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1.2k
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Meta-analysis on rna-seq data without replicates
meta-analysis rnaseq metarnaseq
updated 9.0 years ago by 43k • written 9.0 years ago by ▴ 30
2
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5
replies
3.3k
views
Question on how to proceed and analyze 9 microarray datasets of two different platforms to perform meta-analysis
microarray meta-analysis cross-platform normalization statistical inference
updated 9.3 years ago by ▴ 110 • written 9.8 years ago by ▴ 90
3
votes
6
replies
2.9k
views
Comparison of DE lists from different datasets of same microarray platform
microarray DE-comparison meta-analysis scatter-plot limma
9.6 years ago Konstantinos Yeles ▴ 90
0
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1
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2.2k
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MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
MetaDE meta-analysis
written 9.7 years ago by ▴ 110
4
votes
4
replies
1.8k
views
Comparing DE probes from same-platform microarrays
limma microarray meta-analysis
updated 9.8 years ago by 53k • written 9.8 years ago by ▴ 10
4
votes
1
reply
2.6k
views
Meta-analysis of gene expression data by 'MetaDE'
r meta-analysis MetaDE
updated 9.9 years ago by ▴ 150 • written 10.2 years ago by ▴ 260
2
votes
4
replies
3.4k
views
Meta-Analysis after running limma on a normalized dataset
meta-analysis limma toptable
updated 10.3 years ago by ★ 29k • written 10.3 years ago by ▴ 20
21 results • Page 1 of 1
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Comment: Using DESeq2 for age prediction by ATpoint ★ 5.0k
You sure will find online tutorials on regression models / machine learning classifiers. The support site is for help with Bioconductor. Ch…
Comment: Using DESeq2 for age prediction by picasa1983 • 0
Thanks ! Do you have any idea how to do that ?
Answer: Using DESeq2 for age prediction by ATpoint ★ 5.0k
The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…
Votes
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
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