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meta-analysis
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reset
0
votes
3
replies
1.1k
views
Meta-analysis on RNA-seq data sets
meta-analysis
sva
Combat_Seq
RNAseq
13 months ago
Travis
• 0
0
votes
1
reply
1.5k
views
What does one-sided p-value in DESeq2 mean in biological terms?
one-sided
nbinomWaldTest
p-value
meta-analysis
DESeq2
updated 4.2 years ago by
Michael Love
43k • written 4.2 years ago by
nash12
• 0
0
votes
11
replies
4.8k
views
Remove NaN from a list or replace NaN with a value.
R
meta-analysis
updated 4.3 years ago by
Tanya
• 0 • written 7.0 years ago by
morteza.hadizade
▴ 10
0
votes
7
replies
2.1k
views
Problem using load_raw() function in crossmeta R package
cross
meta-analysis
crossmeta
4.8 years ago • updated 4.7 years ago
michael.s
• 0
3
votes
1
reply
788
views
Meta-Analysis: Start with counts?
meta-analysis
updated 6.5 years ago by
Aaron Lun
★ 29k • written 6.5 years ago by
kerr
• 0
1
vote
2
replies
1.3k
views
Meta-analysis of RNAseq data
RNAseq
meta-analysis
microarray
public data sets
updated 6.8 years ago by
alexvpickering
▴ 110 • written 6.8 years ago by
Vladimir Krasikov
▴ 90
0
votes
3
replies
2.3k
views
Algorithm for between and within microarray normalisation (for meta-analysis).
microarray
meta-analysis
gene expression
updated 6.9 years ago by
Bioconductor Community
0 • written 9.3 years ago by
StephK
▴ 70
2
votes
1
reply
931
views
how do meta-analysis with Na p-value of DESeq2 ?
deseq2
meta-analysis
metaseq
updated 8.4 years ago by
Michael Love
43k • written 8.4 years ago by
ed_isfahani
• 0
0
votes
0
replies
1.1k
views
Meta-Analysis chip-seq data
chip-seq
meta-analysis
8.4 years ago
rezapanahi222
• 0
0
votes
0
replies
1.1k
views
tools or package for meta-analysis of chip-seq result
chipseq
meta-analysis
8.5 years ago
rezapanahi222
• 0
2
votes
4
replies
2.1k
views
R package for Meta-Analysis of CHIP-Seq data
chipseq
meta-analysis
ubuntu
8.5 years ago
rezapanahi222
• 0
6
votes
4
replies
3.9k
views
Meta-analysis of microarrays (and RNA-seq) data
meta-analysis
updated 8.6 years ago by
alexvpickering
▴ 110 • written 8.6 years ago by
giroudpaul
▴ 40
3
votes
6
replies
1.8k
views
Possible approach of compare/interpret RNA-Seq results with microarray gene expression describing the same phenotype
microarray
rnaseq
DEgenes
meta-analysis
limma
updated 8.8 years ago by
Aaron Lun
★ 29k • written 8.8 years ago by
svlachavas
▴ 840
0
votes
1
reply
1.4k
views
meta analysis of p value data by metaseq package
rnaseq
meta-analysis
p values
8.9 years ago
hassangiahi
• 0
0
votes
1
reply
1.2k
views
Meta-analysis on rna-seq data without replicates
meta-analysis
rnaseq
metarnaseq
updated 9.1 years ago by
Michael Love
43k • written 9.1 years ago by
bioinformatics
▴ 30
2
votes
5
replies
3.3k
views
Question on how to proceed and analyze 9 microarray datasets of two different platforms to perform meta-analysis
microarray
meta-analysis
cross-platform normalization
statistical inference
updated 9.4 years ago by
alexvpickering
▴ 110 • written 9.8 years ago by
Konstantinos Yeles
▴ 90
3
votes
6
replies
2.9k
views
Comparison of DE lists from different datasets of same microarray platform
microarray
DE-comparison
meta-analysis
scatter-plot
limma
9.7 years ago
Konstantinos Yeles
▴ 90
0
votes
1
reply
2.2k
views
MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
MetaDE
meta-analysis
written 9.7 years ago by
alexvpickering
▴ 110
4
votes
4
replies
1.8k
views
Comparing DE probes from same-platform microarrays
limma
microarray
meta-analysis
updated 9.9 years ago by
Gordon Smyth
53k • written 9.9 years ago by
clevy
▴ 10
4
votes
1
reply
2.7k
views
Meta-analysis of gene expression data by 'MetaDE'
r
meta-analysis
MetaDE
updated 9.9 years ago by
Cherif Ben Hamda
▴ 150 • written 10.3 years ago by
Agaz Hussain Wani
▴ 260
2
votes
4
replies
3.4k
views
Meta-Analysis after running limma on a normalized dataset
meta-analysis
limma
toptable
updated 10.3 years ago by
Aaron Lun
★ 29k • written 10.3 years ago by
Vani
▴ 20
21 results • Page
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Recent ...
Replies
Comment: Alternative to BrainArray custom CDF packages for Affymetrix chips?
by
insuraasanaa3scetaxrealty
• 0
Lamento que el acceso a los paquetes BrainArray esté fallando; cuando ocurren estos problemas, es util contar con recursos alternativos bie…
Comment: Getting a large intercept with DESeq2
by
Denise
• 0
Hi, Thank you very much, James and Michael, for getting back to me! I noticed the large intercept when plotting the coefficients returned …
Comment: Error installing Seqinfo
by
shepherl
4.2k
Yes and we are working on getting the updated windows binaries distributed asap! We are hopeful by the end of this week
Comment: APAlyzer
by
shepherl
4.2k
We apologize for their unresponsiveness; you could try posting your question here to see if anyone in the community could assist in the me…
Answer: Error installing Seqinfo
by
fabio.marroni
• 0
I am answering my own question. I found the solution thanks to [this post][1], and I am writing here the very simple procedure: 1) Instal…
Votes
Answer: replace cat with message in glmTreat when lfc = 0
Answer: replace cat with message in glmTreat when lfc = 0
Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors
Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors
Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors
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