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meta-analysis
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0
votes
3
replies
1.0k
views
Meta-analysis on RNA-seq data sets
meta-analysis
sva
Combat_Seq
RNAseq
12 months ago
Travis
• 0
0
votes
1
reply
1.4k
views
What does one-sided p-value in DESeq2 mean in biological terms?
one-sided
nbinomWaldTest
p-value
meta-analysis
DESeq2
updated 4.1 years ago by
Michael Love
43k • written 4.1 years ago by
nash12
• 0
0
votes
11
replies
4.8k
views
Remove NaN from a list or replace NaN with a value.
R
meta-analysis
updated 4.1 years ago by
Tanya
• 0 • written 6.9 years ago by
morteza.hadizade
▴ 10
0
votes
7
replies
2.1k
views
Problem using load_raw() function in crossmeta R package
cross
meta-analysis
crossmeta
4.6 years ago
michael.s
• 0
3
votes
1
reply
763
views
Meta-Analysis: Start with counts?
meta-analysis
updated 6.4 years ago by
Aaron Lun
★ 29k • written 6.4 years ago by
kerr
• 0
1
vote
2
replies
1.3k
views
Meta-analysis of RNAseq data
RNAseq
meta-analysis
microarray
public data sets
updated 6.7 years ago by
alexvpickering
▴ 110 • written 6.7 years ago by
Vladimir Krasikov
▴ 90
0
votes
3
replies
2.2k
views
Algorithm for between and within microarray normalisation (for meta-analysis).
microarray
meta-analysis
gene expression
updated 6.7 years ago by
Bioconductor Community
0 • written 9.2 years ago by
StephK
▴ 70
2
votes
1
reply
907
views
how do meta-analysis with Na p-value of DESeq2 ?
deseq2
meta-analysis
metaseq
updated 8.3 years ago by
Michael Love
43k • written 8.3 years ago by
ed_isfahani
• 0
0
votes
0
replies
1.1k
views
Meta-Analysis chip-seq data
chip-seq
meta-analysis
8.3 years ago
rezapanahi222
• 0
0
votes
0
replies
1.0k
views
tools or package for meta-analysis of chip-seq result
chipseq
meta-analysis
8.4 years ago
rezapanahi222
• 0
2
votes
4
replies
2.1k
views
R package for Meta-Analysis of CHIP-Seq data
chipseq
meta-analysis
ubuntu
8.4 years ago
rezapanahi222
• 0
6
votes
4
replies
3.8k
views
Meta-analysis of microarrays (and RNA-seq) data
meta-analysis
updated 8.4 years ago by
alexvpickering
▴ 110 • written 8.5 years ago by
giroudpaul
▴ 40
3
votes
6
replies
1.8k
views
Possible approach of compare/interpret RNA-Seq results with microarray gene expression describing the same phenotype
microarray
rnaseq
DEgenes
meta-analysis
limma
updated 8.7 years ago by
Aaron Lun
★ 29k • written 8.7 years ago by
svlachavas
▴ 840
0
votes
1
reply
1.4k
views
meta analysis of p value data by metaseq package
rnaseq
meta-analysis
p values
8.7 years ago
hassangiahi
• 0
0
votes
1
reply
1.2k
views
Meta-analysis on rna-seq data without replicates
meta-analysis
rnaseq
metarnaseq
updated 9.0 years ago by
Michael Love
43k • written 9.0 years ago by
bioinformatics
▴ 20
2
votes
5
replies
3.2k
views
Question on how to proceed and analyze 9 microarray datasets of two different platforms to perform meta-analysis
microarray
meta-analysis
cross-platform normalization
statistical inference
updated 9.3 years ago by
alexvpickering
▴ 110 • written 9.7 years ago by
Konstantinos Yeles
▴ 90
3
votes
6
replies
2.9k
views
Comparison of DE lists from different datasets of same microarray platform
microarray
DE-comparison
meta-analysis
scatter-plot
limma
9.6 years ago
Konstantinos Yeles
▴ 90
0
votes
1
reply
2.2k
views
MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
MetaDE
meta-analysis
written 9.6 years ago by
alexvpickering
▴ 110
4
votes
4
replies
1.8k
views
Comparing DE probes from same-platform microarrays
limma
microarray
meta-analysis
updated 9.7 years ago by
Gordon Smyth
53k • written 9.7 years ago by
clevy
▴ 10
4
votes
1
reply
2.6k
views
Meta-analysis of gene expression data by 'MetaDE'
r
meta-analysis
MetaDE
updated 9.8 years ago by
Cherif Ben Hamda
▴ 150 • written 10.2 years ago by
Agaz Hussain Wani
▴ 260
2
votes
4
replies
3.4k
views
Meta-Analysis after running limma on a normalized dataset
meta-analysis
limma
toptable
updated 10.2 years ago by
Aaron Lun
★ 29k • written 10.2 years ago by
Vani
▴ 20
21 results • Page
1 of 1
Recent ...
Replies
Comment: Check removeBatchEffect effectiveness
by
massimo
• 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package
by
ksankaran
• 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
ATpoint
★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
ATpoint
★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Comment: R course in Boston December 19-20
by
eja.gaasa2e.r.m
• 0
The upcoming XLSolutions R course in Boston on December 19 20 is a great opportunity to enhance your data skills. Whether you re a beginner…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Comment: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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