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meta-analysis
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0
votes
3
replies
622
views
Meta-analysis on RNA-seq data sets
meta-analysis
sva
Combat_Seq
RNAseq
5 months ago
Travis
• 0
0
votes
1
reply
1.3k
views
What does one-sided p-value in DESeq2 mean in biological terms?
one-sided
nbinomWaldTest
p-value
meta-analysis
DESeq2
updated 3.5 years ago by
Michael Love
43k • written 3.5 years ago by
nash12
• 0
0
votes
11
replies
4.5k
views
Remove NaN from a list or replace NaN with a value.
R
meta-analysis
updated 3.6 years ago by
Tanya
• 0 • written 6.3 years ago by
morteza.hadizade
▴ 10
0
votes
7
replies
1.8k
views
Problem using load_raw() function in crossmeta R package
cross
meta-analysis
crossmeta
4.1 years ago • updated 4.0 years ago
michael.s
• 0
3
votes
1
reply
668
views
Meta-Analysis: Start with counts?
meta-analysis
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
kerr
• 0
1
vote
2
replies
1.1k
views
Meta-analysis of RNAseq data
RNAseq
meta-analysis
microarray
public data sets
updated 6.1 years ago by
alexvpickering
▴ 110 • written 6.1 years ago by
Vladimir Krasikov
▴ 90
0
votes
3
replies
2.1k
views
Algorithm for between and within microarray normalisation (for meta-analysis).
microarray
meta-analysis
gene expression
updated 6.2 years ago by
Bioconductor Community
0 • written 8.6 years ago by
StephK
▴ 70
2
votes
1
reply
845
views
how do meta-analysis with Na p-value of DESeq2 ?
deseq2
meta-analysis
metaseq
updated 7.7 years ago by
Michael Love
43k • written 7.7 years ago by
ed_isfahani
• 0
0
votes
0
replies
983
views
Meta-Analysis chip-seq data
chip-seq
meta-analysis
7.8 years ago
rezapanahi222
• 0
0
votes
0
replies
953
views
tools or package for meta-analysis of chip-seq result
chipseq
meta-analysis
7.8 years ago
rezapanahi222
• 0
2
votes
4
replies
1.9k
views
R package for Meta-Analysis of CHIP-Seq data
chipseq
meta-analysis
ubuntu
7.8 years ago
rezapanahi222
• 0
6
votes
4
replies
3.6k
views
Meta-analysis of microarrays (and RNA-seq) data
meta-analysis
updated 7.9 years ago by
alexvpickering
▴ 110 • written 7.9 years ago by
giroudpaul
▴ 40
3
votes
6
replies
1.6k
views
Possible approach of compare/interpret RNA-Seq results with microarray gene expression describing the same phenotype
microarray
rnaseq
DEgenes
meta-analysis
limma
updated 8.1 years ago by
Aaron Lun
★ 28k • written 8.1 years ago by
svlachavas
▴ 840
0
votes
1
reply
1.3k
views
meta analysis of p value data by metaseq package
rnaseq
meta-analysis
p values
8.2 years ago
hassangiahi
• 0
0
votes
1
reply
1.1k
views
Meta-analysis on rna-seq data without replicates
meta-analysis
rnaseq
metarnaseq
updated 8.4 years ago by
Michael Love
43k • written 8.4 years ago by
bioinformatics
▴ 20
2
votes
5
replies
3.0k
views
Question on how to proceed and analyze 9 microarray datasets of two different platforms to perform meta-analysis
microarray
meta-analysis
cross-platform normalization
statistical inference
updated 8.7 years ago by
alexvpickering
▴ 110 • written 9.1 years ago by
Konstantinos Yeles
▴ 80
3
votes
6
replies
2.5k
views
Comparison of DE lists from different datasets of same microarray platform
microarray
DE-comparison
meta-analysis
scatter-plot
limma
9.0 years ago
Konstantinos Yeles
▴ 80
0
votes
0
replies
1.9k
views
MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
MetaDE
meta-analysis
9.0 years ago
alexvpickering
▴ 110
4
votes
4
replies
1.6k
views
Comparing DE probes from same-platform microarrays
limma
microarray
meta-analysis
updated 9.2 years ago by
Gordon Smyth
52k • written 9.2 years ago by
clevy
▴ 10
4
votes
1
reply
2.5k
views
Meta-analysis of gene expression data by 'MetaDE'
r
meta-analysis
MetaDE
updated 9.2 years ago by
Cherif Ben Hamda
▴ 150 • written 9.6 years ago by
Agaz Hussain Wani
▴ 260
2
votes
4
replies
3.2k
views
Meta-Analysis after running limma on a normalized dataset
meta-analysis
limma
toptable
updated 9.6 years ago by
Aaron Lun
★ 28k • written 9.6 years ago by
Vani
▴ 20
21 results • Page
1 of 1
Recent ...
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Comment: error in ChAMP loading file
by
shocked.tick.zyet
• 0
Great troubleshooting steps for ChAMP import issues! "ChAMP methylation data import errors" on [Google Search][1] for similar cases. Header…
Comment: orgDB
by
jenniferping36
• 0
Thanks for the suggestion! I'll check out the resources.
Comment: sesameDataCache is not work properly on my system
by
Samreen
• 0
Any luck with this? I have tried all of the above and it still doesn't work. This is my session info and I'm on a cluster computing environ…
Answer: Using tximport for kallisto aligned TOIL data
by
James W. MacDonald
68k
If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …
Answer: Reading gene expression data in GPR format and converting it to xlsx format
by
James W. MacDonald
68k
Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …
Votes
Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
How to remove genes with 0 counts in tximport?
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