Showing : meta-analysis • reset
0
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3
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479
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Meta-analysis on RNA-seq data sets
meta-analysis sva Combat_Seq RNAseq
4 months ago Travis • 0
0
votes
1
reply
1.2k
views
What does one-sided p-value in DESeq2 mean in biological terms?
one-sided nbinomWaldTest p-value meta-analysis DESeq2
updated 3.4 years ago by 43k • written 3.4 years ago by • 0
0
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11
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4.4k
views
Remove NaN from a list or replace NaN with a value.
R meta-analysis
updated 3.5 years ago by • 0 • written 6.2 years ago by ▴ 10
0
votes
7
replies
1.8k
views
Problem using load_raw() function in crossmeta R package
cross meta-analysis crossmeta
4.0 years ago • updated 3.9 years ago michael.s • 0
3
votes
1
reply
636
views
Meta-Analysis: Start with counts?
meta-analysis
updated 5.7 years ago by ★ 28k • written 5.7 years ago by • 0
1
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2
replies
1.0k
views
Meta-analysis of RNAseq data
RNAseq meta-analysis microarray public data sets
updated 6.0 years ago by ▴ 110 • written 6.0 years ago by ▴ 90
0
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3
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2.1k
views
Algorithm for between and within microarray normalisation (for meta-analysis).
microarray meta-analysis gene expression
updated 6.1 years ago by 0 • written 8.5 years ago by ▴ 70
2
votes
1
reply
834
views
how do meta-analysis with Na p-value of DESeq2 ?
deseq2 meta-analysis metaseq
updated 7.6 years ago by 43k • written 7.6 years ago by • 0
0
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0
replies
964
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Meta-Analysis chip-seq data
chip-seq meta-analysis
7.6 years ago rezapanahi222 • 0
0
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0
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931
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tools or package for meta-analysis of chip-seq result
chipseq meta-analysis
7.7 years ago rezapanahi222 • 0
2
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4
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1.9k
views
R package for Meta-Analysis of CHIP-Seq data
chipseq meta-analysis ubuntu
7.7 years ago rezapanahi222 • 0
6
votes
4
replies
3.5k
views
Meta-analysis of microarrays (and RNA-seq) data
meta-analysis
updated 7.8 years ago by ▴ 110 • written 7.8 years ago by ▴ 40
3
votes
6
replies
1.5k
views
Possible approach of compare/interpret RNA-Seq results with microarray gene expression describing the same phenotype
microarray rnaseq DEgenes meta-analysis limma
updated 8.0 years ago by ★ 28k • written 8.0 years ago by ▴ 840
0
votes
1
reply
1.3k
views
meta analysis of p value data by metaseq package
rnaseq meta-analysis p values
8.1 years ago hassangiahi • 0
0
votes
1
reply
1.1k
views
Meta-analysis on rna-seq data without replicates
meta-analysis rnaseq metarnaseq
updated 8.3 years ago by 43k • written 8.3 years ago by ▴ 20
2
votes
5
replies
2.9k
views
Question on how to proceed and analyze 9 microarray datasets of two different platforms to perform meta-analysis
microarray meta-analysis cross-platform normalization statistical inference
updated 8.6 years ago by ▴ 110 • written 9.0 years ago by ▴ 80
3
votes
6
replies
2.4k
views
Comparison of DE lists from different datasets of same microarray platform
microarray DE-comparison meta-analysis scatter-plot limma
8.9 years ago Konstantinos Yeles ▴ 80
0
votes
0
replies
1.9k
views
MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
MetaDE meta-analysis
8.9 years ago alexvpickering ▴ 110
4
votes
4
replies
1.6k
views
Comparing DE probes from same-platform microarrays
limma microarray meta-analysis
updated 9.1 years ago by 52k • written 9.1 years ago by ▴ 10
4
votes
1
reply
2.5k
views
Meta-analysis of gene expression data by 'MetaDE'
r meta-analysis MetaDE
updated 9.1 years ago by ▴ 150 • written 9.5 years ago by ▴ 260
2
votes
4
replies
3.1k
views
Meta-Analysis after running limma on a normalized dataset
meta-analysis limma toptable
updated 9.5 years ago by ★ 28k • written 9.5 years ago by ▴ 20
21 results • Page 1 of 1
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Comment: input for singR function by iamin053 • 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Comment: build samplesheet and plot profile by yf • 0
![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a
Answer: I am having issues with bowtie2_build by James W. MacDonald 67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Votes
A: Doubt about the "zero expression" genes or genes with no reads at all in the co
Answer: Unable to install nloptr
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
C: How does edgeR cpm function calculate log(CPM) values?
Answer: Selection of correct coefficients or contrasts in DESeq2
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