Bioconductor MethylationEPIC

Showing : methylationEPIC • reset

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methylationEPIC minfi microarray epigenetics EPIC

6.7 years ago firestar ▴ 20

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microarray methylationEPIC epigenetics minfi EPIC

6.7 years ago firestar ▴ 20

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ChAMP champ 2.9.10 methylationepic

7.7 years ago david.ch • 0

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rnbeads methylation methylationepic dna methylation

7.8 years ago gabrielrfries • 0

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champ methylationepic

updated 7.8 years ago by Yuan Tian ▴ 290 • written 7.8 years ago by csappleby-mallinder1 • 0

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ChAMP methylationepic epicarray epigenomics

updated 8.2 years ago by rcavalca ▴ 140 • written 8.2 years ago by karthikrpad ▴ 10

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minfi methylationepic illuminahumanmethylationepicanno.ilmn10b.hg19 SNP

8.4 years ago Ellen O • 0

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methylation illumina EPIC methylationepic idat

updated 8.6 years ago by Guido Hooiveld ★ 4.1k • written 8.6 years ago by Ellen O • 0

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methylation epic microarray minfi methylationepic

8.7 years ago nhejazi • 0

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shinymethyl minfi epic microarray methylationepic qualitycontrol

8.8 years ago chelsey.ju • 0

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minfi illumina methylationEPIC densityplot

8.9 years ago annabelle.congras ▴ 10

11 results • Page 1 of 1

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Comment: upstream git branches of bioc-release by TrentonCollier99 • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Comment: upstream git branches of bioc-release by Jeroen ▴ 10

OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.

Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k

I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```

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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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