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methylationEPIC
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0
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1.3k
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Beta values and M values cluster differently
methylationEPIC
minfi
microarray
epigenetics
EPIC
5.8 years ago
firestar
▴ 20
0
votes
0
replies
953
views
Best normalisation method
microarray
methylationEPIC
epigenetics
minfi
EPIC
5.8 years ago
firestar
▴ 20
3
votes
6
replies
2.4k
views
could not find function "champ.load"
ChAMP
champ 2.9.10
methylationepic
6.8 years ago
david.ch
• 0
0
votes
0
replies
1.2k
views
differential methylation analysis with RnBeads
rnbeads
methylation
methylationepic
dna methylation
6.9 years ago
gabrielrfries
• 0
0
votes
1
reply
2.2k
views
ChAMP Methylation analysis error code "could not find function champ.load"
champ
methylationepic
updated 6.9 years ago by
Yuan Tian
▴ 290 • written 6.9 years ago by
csappleby-mallinder1
• 0
3
votes
4
replies
3.5k
views
Error while using champ.svd() function in subset of data
ChAMP
methylationepic
epicarray
epigenomics
updated 7.3 years ago by
rcavalca
▴ 140 • written 7.3 years ago by
karthikrpad
▴ 10
0
votes
0
replies
1.1k
views
Error when changing the database for minfi dropLociWithSnps
minfi
methylationepic
illuminahumanmethylationepicanno.ilmn10b.hg19
SNP
7.5 years ago
Ellen O
• 0
0
votes
2
replies
2.3k
views
Illumina methylationEPIC demo data in IDAT format?
methylation
illumina
EPIC
methylationepic
idat
updated 7.6 years ago by
Guido Hooiveld
★ 4.1k • written 7.7 years ago by
Ellen O
• 0
0
votes
4
replies
1.9k
views
minfi "mapToGenome" dimension error
methylation
epic microarray
minfi
methylationepic
7.8 years ago
nhejazi
• 0
0
votes
0
replies
1.2k
views
Shinymethyl 850K Array quality control signal cutoffs
shinymethyl
minfi
epic microarray
methylationepic
qualitycontrol
7.9 years ago
chelsey.ju
• 0
0
votes
3
replies
1.9k
views
MINFI missing samples in qcreports and densityplots
minfi
illumina
methylationEPIC
densityplot
8.0 years ago
annabelle.congras
▴ 10
11 results • Page
1 of 1
Recent ...
Replies
Answer: How do I fix an odd voom plot in a combined dataset?
by
Gordon Smyth
52k
voom is a DE analysis method rather than a normalization method. voom expects the design matrix to be the same complete design matrix that …
Comment: enrichGOgradient color change
by
lewis.roper
• 0
I know you submitted this months ago but you're an absolute lifesaver mate, thank you
Comment: Warning message when running limma with covariates
by
Chris
▴ 20
Hi @gordonsmyth. Happy New Year! Wishing you all the best in 2025. Thank you so much for your kind support!
Comment: minfi latest update for EPIC V2 chip
by
macdonaldfrench7286566
• 0
Yes, the most updated analysis for the EPIC V2 chip using the minfi package still involves using the annotations provided by jokergoo. *Th…
Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
by
Gordon Smyth
52k
To compute CPM values from edgeR: ``` y <- DGEList(counts = counts, samples = samples, genes = genes, group = samples$Disease_status) y <- …
Votes
Answer: enrichGOgradient color change
How do I fix an odd voom plot in a combined dataset?
Answer: Warning message when running limma with covariates
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
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