Bioconductor Methylkit

Showing : methylkit • reset

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methylKit

updated 4 weeks ago by James W. MacDonald 65k • written 5 weeks ago by CHEN • 0

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136

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methylKit

4 weeks ago Modoc Kesner ▴ 10

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457

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methylKit

9 months ago Andrés • 0

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591

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methRead methylkit

17 months ago • updated 16 months ago liulip • 0

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664

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methyl methylKit

2.1 years ago hasche • 0

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1.5k

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GenomicRanges methylKit S4Vectors

updated 2.1 years ago by James W. MacDonald 65k • written 2.1 years ago by hasche • 0

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1.2k

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methylkit

updated 2.6 years ago by alex.gos90 ▴ 10 • written 2.9 years ago by hasche • 0

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1.1k

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methylation methylKit bsseq

updated 2.6 years ago by alex.gos90 ▴ 10 • written 2.8 years ago by ag1805x ▴ 80

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1.1k

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annotateWithGeneParts methylKit

2.6 years ago tanmayroy1979 ▴ 20

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1.2k

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methylkit normalizecoverage NA

updated 5.5 years ago by altuna akalin ▴ 20 • written 5.5 years ago by GFM ▴ 20

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1.1k

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R bioconductor methylation methylkit

updated 5.8 years ago by altuna akalin ▴ 20 • written 5.8 years ago by nilaycan • 0

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1.6k

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methylkit Tutorial

updated 6.4 years ago by Martin Morgan 25k • written 6.4 years ago by s1432985 • 0

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1.7k

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methylKit

updated 6.8 years ago by altuna akalin ▴ 20 • written 6.8 years ago by ch8316f5eyu • 0

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1.7k

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methylKit

6.9 years ago kamal.fartiyal84 ▴ 10

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1.6k

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methylKit bioconductor

updated 7.7 years ago by Martin Morgan 25k • written 7.7 years ago by tangming2005 ▴ 190

15 results • Page 1 of 1

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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

> Any suggestions for methylation data segmentation? I think the same segmentation can be used.

Comment: deseq2 results by swbarnes2 ★ 1.3k

Cross-posted https://www.biostars.org/p/9594331/#9594458

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k

The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…

Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.

Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k

From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …

Votes

A: Volcanoplot with limma - RAW P-values or Adj.P-Values

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: minfi latest update for EPIC V2 chip

A: Error in DESeqDataSet : some values in assay are not integers

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Teacher to Michael Love 42k