Bioconductor MinfiData

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DNA minfiData minfiDataEPIC DNAMethylation minfi

8 months ago user_bioinfo • 0

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733

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bumphunter minfiData minfi bumphun

updated 15 months ago by James W. MacDonald 68k • written 15 months ago by kumakeren16 • 0

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881

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minfiData minfi

updated 18 months ago by Basti ▴ 780 • written 18 months ago by clacarion • 0

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651

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methylclockData minfi methylclock minfidata

updated 20 months ago by James W. MacDonald 68k • written 20 months ago by sharangiiv • 0

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1.8k

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RnBeads minfiData minfi EPICarray

updated 2.5 years ago by Basti ▴ 780 • written 2.5 years ago by Jitendra ▴ 10

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1.9k

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

updated 2.7 years ago by James W. MacDonald 68k • written 2.7 years ago by Grace • 0

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2.3k

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

written 2.7 years ago by Grace • 0

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1.3k

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minfiData ChAMP

3.8 years ago behr201 • 0

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1.2k

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minfi minfiData MethylationArrayData

4.2 years ago ponche_de_kiwi • 0

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2.9k

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minfiData plotsex minfi minfiDataEPIC r

updated 4.7 years ago by suman • 0 • written 4.7 years ago by Bethan • 0

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2.5k

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minfi methylation dataimport minfidata missmethyl

updated 7.1 years ago by James W. MacDonald 68k • written 7.1 years ago by moldach ▴ 20

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1.8k

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minfi minfidata rgl. mac os x el capitan

updated 9.5 years ago by Kasper Daniel Hansen ★ 6.5k • written 9.5 years ago by holbrookjoanna • 0

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2.6k

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minfidata minfi illuminahumanmethylation450k.db illuminahumanmethylation450kanno.ilmn12.hg19

10.5 years ago alejandretheodore • 0

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2.4k

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minfi minfidata illumina methylation dmpfinder

updated 11.1 years ago by James W. MacDonald 68k • written 11.1 years ago by michael.zulyniak • 0

14 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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