Bioconductor MinfiData

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DNA minfiData minfiDataEPIC DNAMethylation minfi

9 months ago user_bioinfo • 0

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749

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bumphunter minfiData minfi bumphun

updated 16 months ago by James W. MacDonald 68k • written 16 months ago by kumakeren16 • 0

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927

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minfiData minfi

updated 19 months ago by Basti ▴ 780 • written 19 months ago by clacarion • 0

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methylclockData minfi methylclock minfidata

updated 21 months ago by James W. MacDonald 68k • written 21 months ago by sharangiiv • 0

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RnBeads minfiData minfi EPICarray

updated 2.5 years ago by Basti ▴ 780 • written 2.5 years ago by Jitendra ▴ 10

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

updated 2.7 years ago by James W. MacDonald 68k • written 2.7 years ago by Grace • 0

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

written 2.7 years ago by Grace • 0

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minfiData ChAMP

3.9 years ago behr201 • 0

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minfi minfiData MethylationArrayData

4.3 years ago ponche_de_kiwi • 0

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minfiData plotsex minfi minfiDataEPIC r

updated 4.7 years ago by suman • 0 • written 4.8 years ago by Bethan • 0

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minfi methylation dataimport minfidata missmethyl

updated 7.2 years ago by James W. MacDonald 68k • written 7.2 years ago by moldach ▴ 20

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minfi minfidata rgl. mac os x el capitan

updated 9.6 years ago by Kasper Daniel Hansen ★ 6.5k • written 9.6 years ago by holbrookjoanna • 0

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minfidata minfi illuminahumanmethylation450k.db illuminahumanmethylation450kanno.ilmn12.hg19

10.6 years ago alejandretheodore • 0

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minfi minfidata illumina methylation dmpfinder

updated 11.2 years ago by James W. MacDonald 68k • written 11.2 years ago by michael.zulyniak • 0

14 results • Page 1 of 1

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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Comment: upstream git branches of bioc-release by Jeroen ▴ 10

OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.

Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k

I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```

Answer: p.adjust BH Question by Gordon Smyth 53k

Duplicate of https://support.bioconductor.org/p/41077/

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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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