Bioconductor MinfiData

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minfiData minfi

updated 7 weeks ago by Basti ▴ 780 • written 7 weeks ago by clacarion • 0

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226

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methylclockData minfi methylclock minfidata

updated 3 months ago by James W. MacDonald 66k • written 3 months ago by sharangiiv • 0

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RnBeads minfiData minfi EPICarray

updated 13 months ago by Basti ▴ 780 • written 13 months ago by Jitendra ▴ 10

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1.1k

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

updated 15 months ago by James W. MacDonald 66k • written 15 months ago by Grace • 0

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1.3k

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

written 15 months ago by Grace • 0

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minfiData ChAMP

2.4 years ago behr201 • 0

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775

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minfi minfiData MethylationArrayData

2.9 years ago ponche_de_kiwi • 0

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2.1k

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minfiData plotsex minfi minfiDataEPIC r

updated 3.3 years ago by suman • 0 • written 3.3 years ago by Bethan • 0

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minfi methylation dataimport minfidata missmethyl

updated 5.7 years ago by James W. MacDonald 66k • written 5.7 years ago by moldach ▴ 20

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1.5k

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minfi minfidata rgl. mac os x el capitan

updated 8.1 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.1 years ago by holbrookjoanna • 0

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2.3k

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minfidata minfi illuminahumanmethylation450k.db illuminahumanmethylation450kanno.ilmn12.hg19

9.2 years ago alejandretheodore • 0

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minfi minfidata illumina methylation dmpfinder

updated 9.7 years ago by James W. MacDonald 66k • written 9.8 years ago by michael.zulyniak • 0

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Comment: Most enriched pathway is not expressed when modifying universe parameter by adripel • 0

Well, I was looking at the result table (enrich18k@result, or yy@result in your example), and it gives every pathway even the non-significa…

Comment: Trouble reading samplesheet in with diffbind to create dba by Mallory • 0

Thank you for your reply! There mustve been something wierd going on with my peak formats as you pointed out. I recalled all the peaks and …

Answer: Trouble reading samplesheet in with diffbind to create dba by Anthony • 0

I was struggling with this today too. For me it happened because my peak files were not in the correct format. The "10 elements" refers to …

Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100

Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz

Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k

The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …

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A: dream vignette says limma-voom repeated measures two-group comparison needs two

Answer: Get the latest gene name from Entrez ID

Get the latest gene name from Entrez ID

Answer: biomaRt not working - lazy table error

Answer: How to do DESeq2 on Kallisto Data

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