Bioconductor MinfiData

Showing : minfiData • reset

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384

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bumphunter minfiData minfi bumphun

updated 3 months ago by James W. MacDonald 67k • written 4 months ago by kumakeren16 • 0

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482

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minfiData minfi

updated 6 months ago by Basti ▴ 780 • written 6 months ago by clacarion • 0

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372

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methylclockData minfi methylclock minfidata

updated 8 months ago by James W. MacDonald 67k • written 8 months ago by sharangiiv • 0

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1.3k

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RnBeads minfiData minfi EPICarray

updated 18 months ago by Basti ▴ 780 • written 18 months ago by Jitendra ▴ 10

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1.4k

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

updated 20 months ago by James W. MacDonald 67k • written 20 months ago by Grace • 0

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1.6k

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

written 20 months ago by Grace • 0

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1.0k

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minfiData ChAMP

2.8 years ago behr201 • 0

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947

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minfi minfiData MethylationArrayData

3.2 years ago ponche_de_kiwi • 0

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2.4k

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minfiData plotsex minfi minfiDataEPIC r

updated 3.7 years ago by suman • 0 • written 3.7 years ago by Bethan • 0

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2.2k

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minfi methylation dataimport minfidata missmethyl

updated 6.1 years ago by James W. MacDonald 67k • written 6.1 years ago by moldach ▴ 20

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1.6k

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minfi minfidata rgl. mac os x el capitan

updated 8.5 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.5 years ago by holbrookjoanna • 0

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2.4k

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minfidata minfi illuminahumanmethylation450k.db illuminahumanmethylation450kanno.ilmn12.hg19

9.6 years ago alejandretheodore • 0

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2.1k

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minfi minfidata illumina methylation dmpfinder

updated 10.1 years ago by James W. MacDonald 67k • written 10.1 years ago by michael.zulyniak • 0

13 results • Page 1 of 1

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Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0

Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…

Comment: Problem at champ.load by andrew.gibbons • 0

I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

Awards • All

Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k