Bioconductor MinfiData

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DNA minfiData minfiDataEPIC DNAMethylation minfi

7 months ago user_bioinfo • 0

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714

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bumphunter minfiData minfi bumphun

updated 15 months ago by James W. MacDonald 68k • written 15 months ago by kumakeren16 • 0

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844

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minfiData minfi

updated 17 months ago by Basti ▴ 780 • written 17 months ago by clacarion • 0

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631

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methylclockData minfi methylclock minfidata

updated 19 months ago by James W. MacDonald 68k • written 19 months ago by sharangiiv • 0

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1.7k

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RnBeads minfiData minfi EPICarray

updated 2.4 years ago by Basti ▴ 780 • written 2.4 years ago by Jitendra ▴ 10

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1.9k

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

updated 2.6 years ago by James W. MacDonald 68k • written 2.6 years ago by Grace • 0

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2.2k

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

written 2.6 years ago by Grace • 0

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1.3k

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minfiData ChAMP

3.8 years ago behr201 • 0

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1.2k

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minfi minfiData MethylationArrayData

4.2 years ago ponche_de_kiwi • 0

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2.8k

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minfiData plotsex minfi minfiDataEPIC r

updated 4.6 years ago by suman • 0 • written 4.6 years ago by Bethan • 0

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2.5k

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minfi methylation dataimport minfidata missmethyl

updated 7.1 years ago by James W. MacDonald 68k • written 7.1 years ago by moldach ▴ 20

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1.8k

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minfi minfidata rgl. mac os x el capitan

updated 9.4 years ago by Kasper Daniel Hansen ★ 6.5k • written 9.4 years ago by holbrookjoanna • 0

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2.6k

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minfidata minfi illuminahumanmethylation450k.db illuminahumanmethylation450kanno.ilmn12.hg19

10.5 years ago alejandretheodore • 0

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2.3k

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minfi minfidata illumina methylation dmpfinder

updated 11.1 years ago by James W. MacDonald 68k • written 11.1 years ago by michael.zulyniak • 0

14 results • Page 1 of 1

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Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

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Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Answer: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

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