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minfiData
•
reset
1
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2
replies
756
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normalizatino of dna methylation EPIC data
DNA
minfiData
minfiDataEPIC
DNAMethylation
minfi
7 months ago
user_bioinfo
• 0
0
votes
1
reply
714
views
minfi - bumphunter value problem
bumphunter
minfiData
minfi
bumphun
updated 15 months ago by
James W. MacDonald
68k • written 15 months ago by
kumakeren16
• 0
1
vote
4
replies
844
views
minfi::read.metharray.exp
minfiData
minfi
updated 17 months ago by
Basti
▴ 780 • written 17 months ago by
clacarion
• 0
0
votes
1
reply
631
views
Matrix multiplication error to estimate telomere length
methylclockData
minfi
methylclock
minfidata
updated 19 months ago by
James W. MacDonald
68k • written 19 months ago by
sharangiiv
• 0
0
votes
3
replies
1.7k
views
Batch correction using control probes in EPIC array data
RnBeads
minfiData
minfi
EPICarray
updated 2.4 years ago by
Basti
▴ 780 • written 2.4 years ago by
Jitendra
▴ 10
0
votes
4
replies
1.9k
views
Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis
minfiData
minfi
MethylationArrayData
MethylationArray
updated 2.6 years ago by
James W. MacDonald
68k • written 2.6 years ago by
Grace
• 0
0
votes
5
replies
2.2k
views
minfi error read.metharray.exp
methylationArrayAnalysis
minfiData
minfi
MethylationArrayData
MethylationArray
written 2.6 years ago by
Grace
• 0
0
votes
0
replies
1.3k
views
Error in champ.svd - function 'EstDimRMTv2' within champ.svd acting inconsistently?
minfiData
ChAMP
3.8 years ago
behr201
• 0
0
votes
0
replies
1.2k
views
minfi - estimateCellCounts2-proportions sum more than 1
minfi
minfiData
MethylationArrayData
4.2 years ago
ponche_de_kiwi
• 0
1
vote
1
reply
2.8k
views
plotSex error message
minfiData
plotsex
minfi
minfiDataEPIC
r
updated 4.6 years ago by
suman
• 0 • written 4.6 years ago by
Bethan
• 0
1
vote
2
replies
2.5k
views
Minfi read.metharray.sheet error
minfi
methylation
dataimport
minfidata
missmethyl
updated 7.1 years ago by
James W. MacDonald
68k • written 7.1 years ago by
moldach
▴ 20
0
votes
1
reply
1.8k
views
Problem loading minfi on macOS
minfi
minfidata
rgl.
mac os x
el capitan
updated 9.4 years ago by
Kasper Daniel Hansen
★ 6.5k • written 9.4 years ago by
holbrookjoanna
• 0
0
votes
1
reply
2.6k
views
Analyzing 450k Methylation from TCGA Website
minfidata
minfi
illuminahumanmethylation450k.db
illuminahumanmethylation450kanno.ilmn12.hg19
10.5 years ago
alejandretheodore
• 0
0
votes
2
replies
2.3k
views
Help resovling"Error in lm.fit" with 'dmpFinder' function in minfi
minfi
minfidata
illumina
methylation
dmpfinder
updated 11.1 years ago by
James W. MacDonald
68k • written 11.1 years ago by
michael.zulyniak
• 0
14 results • Page
1 of 1
Recent ...
Replies
Comment: Help with defining groups
by
Phinney, Brett
▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness
by
massimo
• 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package
by
ksankaran
• 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
ATpoint
★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
ATpoint
★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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