Showing : mroast • reset
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Interpretation of mroast p-value results for gene set testing of specific molecular signatures using microarray data
mroast camera gene set testing
3.6 years ago svlachavas ▴ 830
4
votes
4
replies
1.4k
views
Interpreting mroast results
mroast limma roast
5.4 years ago SB • 0
1
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2
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1.3k
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Explanation of mroast results for specific biological processes and error with barcodeplot function with a microarray dataset
limma mroast agilent microarrays GO.BP barcodeplot
updated 5.6 years ago by 50k • written 5.6 years ago by ▴ 830
2
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3
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1.4k
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Perform limma based gene-set testing for a two-group comparison in a microarray dataset regarding specific biological processes
limma agilent microarrays mroast fry gene tests gene set testing
updated 5.6 years ago by 50k • written 5.6 years ago by ▴ 830
0
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2
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922
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mroast/fry with gene weights for most or all genes
limma mroast fry
updated 5.6 years ago by 50k • written 5.7 years ago by ▴ 180
3
votes
4
replies
839
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Is number of rotations dependent on number of gene sets in mroast?
limma mroast
updated 5.8 years ago by 50k • written 5.8 years ago by • 0
3
votes
3
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922
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Conditions for using Fry
limma mroast fry
updated 5.8 years ago by 50k • written 5.8 years ago by • 0
0
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3
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1.9k
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Barcodeplot limma function using two logFC lists
limma edger barcodeplot gene set enrichment mroast
updated 6.3 years ago by 50k • written 6.3 years ago by • 0
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6
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1.8k
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Different results obtained from mroast and camera from Deseq2 counts
limma camera mroast tximport
updated 6.9 years ago by 65k • written 6.9 years ago by ▴ 40
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2
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1.5k
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using camera/roast/romer to find enriched gene sets from proteomics data
limma proteomics camera mroast romer
updated 7.6 years ago by 50k • written 7.6 years ago by • 0
2
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2
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1.3k
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limma roast/mroast with patient-matched pre-/post- treatment
limma roast mroast block
updated 7.8 years ago by ★ 7.9k • written 7.8 years ago by • 0
2
votes
2
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1.2k
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Running Roast with Gene Symbols of Curated Genes
mroast roast gene set gene set analysis edgeR
updated 7.9 years ago by 65k • written 7.9 years ago by • 0
0
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3
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1.4k
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ROAST using curated gene sets
edgeR mroast roast
7.9 years ago lattalic • 0
8
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4
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5.6k
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Differences between edgeR's and limma+voom's implementation of camera/roast/romer
limma edger mroast romer camera
updated 8.2 years ago by ★ 13k • written 8.2 years ago by ▴ 180
7
votes
6
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3.2k
views
Interpretation of mroast gene set analysis in R and appropriate use of the function barcode plot regarding a microarray dataset
limma mroast barcodeplot KEGG gene set testing
updated 8.4 years ago by 50k • written 8.4 years ago by ▴ 830
7
votes
9
replies
3.0k
views
limma's mroast and romer
romer mroast limma
updated 8.6 years ago by 50k • written 8.6 years ago by ▴ 10
7
votes
10
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1.7k
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Possible TF binding site enrichment analysis through mroast and conversion problems
TF binding site analysis bioconductor mroast limma promoter analysis
updated 8.9 years ago by ★ 28k • written 8.9 years ago by ▴ 830
5
votes
11
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1.8k
views
Appropriate methodologies for using various inputs(GOs, gene-sets) for mroast testing
limma mroast GSEA GO illumina human ht-12 v4
updated 8.9 years ago by ★ 28k • written 8.9 years ago by ▴ 830
0
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1
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1.5k
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Graphic representation of mroast results
mroast visualization
8.9 years ago Elena Serrano ▴ 30
6
votes
10
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1.8k
views
Possible implementation of roast/mroast for testing common DE patterns across two different experiments
gene set testing roast mroast differential gene expression bioconductor
9.0 years ago svlachavas ▴ 830
0
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4
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1.6k
views
Argument gene.data for the correct implementation of fuction pathview of the pathview package
mroast limma pathview pathway analysis
updated 9.1 years ago by ★ 1.6k • written 9.1 years ago by ▴ 830
2
votes
6
replies
1.6k
views
Appropriate use of the function mroast to find KEGG pathways for differential expression
mroast limma pathway analysis differential gene expression affymetrix
9.1 years ago svlachavas ▴ 830
22 results • Page 1 of 1
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results by swbarnes2 ★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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