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nanostringdiff
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2.1k
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fgsea/clusterProfiler Packages for nCounter data enrichment analysis
NanoStringDiff
clusterProfiler
fgsea
2.5 years ago
pg45863
▴ 10
0
votes
2
replies
1.8k
views
Nanostring data differential expression analysis: limma or DESeq2?
DESeq2
NanoStringDiff
limma
2.5 years ago
pg45863
▴ 10
0
votes
1
reply
1.1k
views
Micro Array GEO data analysis
GEOquery
MicroarrayData
Normalization
Microarray
NanoStringDiff
updated 2.8 years ago by
James W. MacDonald
68k • written 2.8 years ago by
Aleksandra
• 0
0
votes
2
replies
863
views
NanoStringDiff contrast vectors
NanoStringDiff
updated 3.0 years ago by
James W. MacDonald
68k • written 3.0 years ago by
Paraskevi
• 0
0
votes
0
replies
993
views
NanoStringDiff
DifferentialExpression
NanoStringDiff
4.0 years ago
sanrie10
• 0
5
votes
7
replies
2.4k
views
Nanostringdiff - defining contrast values for blocking variables in glm
limma
edgeR
DESeq2
NanoStringDiff
updated 4.2 years ago by
James W. MacDonald
68k • written 4.2 years ago by
reberya
• 0
3
votes
2
replies
1.5k
views
R NanoStringDiff: DE analysis, from 2 group comparison method how "logFC" generated?
Nan
NanoStringDiff
4.4 years ago
choijamts
• 0
3
votes
6
replies
2.6k
views
Why NanoStringDiff package so slow?
NanoStringDiff
NanoString
nCounter
DE analysis
updated 2.1 years ago by
georgersmith
• 0 • written 6.3 years ago by
lim6432
▴ 60
0
votes
0
replies
1.0k
views
NanoStringDiff - housekeeping genes variation
NanoStringDiff
4.7 years ago
YM
• 0
1
vote
1
reply
1.4k
views
NanoStringDiff Not Recognized as Numeric
Bioconductor
Transcriptomics
NanoStringDiff
updated 5.1 years ago by
Laurent Gatto
1.6k • written 5.1 years ago by
Pedro
▴ 10
1
vote
7
replies
1.7k
views
NanoStringDiff glm.LRT not finishing after 20 hours
NanoStringDiff
5.9 years ago
stephen.pollo
• 0
0
votes
2
replies
1.3k
views
NanoStringDiff correction for variation between patient
NanoStringDiff
GLM
Gene expression
updated 6.3 years ago by
James W. MacDonald
68k • written 6.3 years ago by
Guillaume Robert
• 0
3
votes
3
replies
2.0k
views
NanoStringDiff counts not numeric
NanoStringDiff
updated 22 months ago by
pjanas
• 0 • written 6.5 years ago by
noelleenright
▴ 10
1
vote
6
replies
2.8k
views
How to access normalized data in the NanoStringDiff package?
nanostringdiff
nanostring
NanoStringDiff
updated 7.5 years ago by
James W. MacDonald
68k • written 7.5 years ago by
casey.rimland
▴ 170
0
votes
0
replies
1.7k
views
design matrix and contrast for paired experiment using NanoStringDiff for nCounter data
nanostring
NanoStringDiff
design and contrast matrix
differential gene expression
ncounter
8.4 years ago
c.kohler
• 0
15 results • Page
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Comment: upstream git branches of bioc-release
by
andres.wokaty
▴ 70
Yes, all packages in https://bioconductor.org/packages/json/3.22bioc/packages.json have a `RELEASE_3_22` branch.
Comment: upstream git branches of bioc-release
by
Jeroen
▴ 10
Can we assume that each package git repo will have a `RELEASE_3_22` branch, even when they had "a build error in release"?
Comment: upstream git branches of bioc-release
by
andres.wokaty
▴ 70
The https://bioc-release.r-universe.dev should follow `RELEASE_3_22` for all packages. The packages that show `git_branch` as `devel` don'…
Comment: gene Set with high AUC score but no cells assigned to cell type
by
gogeni5529
• 0
THIS is spam. How Do I delete it?
Comment: limpa - drivers for unusually high standard error?
by
Julia Broadbent
• 0
Apologies for not being clearer in my initial question, but thank you for answering regardless! The large SE values I am looking at appear …
Votes
Comment: upstream git branches of bioc-release
A: p.adjust BH generates duplicate values
Answer: gene Set with high AUC score but no cells assigned to cell type
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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