Bioconductor Nanostringdiff

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2.1k

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NanoStringDiff clusterProfiler fgsea

2.4 years ago pg45863 ▴ 10

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1.7k

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DESeq2 NanoStringDiff limma

2.4 years ago pg45863 ▴ 10

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1.1k

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GEOquery MicroarrayData Normalization Microarray NanoStringDiff

updated 2.8 years ago by James W. MacDonald 68k • written 2.8 years ago by Aleksandra • 0

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831

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NanoStringDiff

updated 2.9 years ago by James W. MacDonald 68k • written 2.9 years ago by Paraskevi • 0

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916

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DifferentialExpression NanoStringDiff

3.9 years ago sanrie10 • 0

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2.3k

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limma edgeR DESeq2 NanoStringDiff

updated 4.1 years ago by James W. MacDonald 68k • written 4.2 years ago by reberya • 0

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1.4k

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Nan NanoStringDiff

4.3 years ago choijamts • 0

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2.6k

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NanoStringDiff NanoString nCounter DE analysis

updated 24 months ago by georgersmith • 0 • written 6.2 years ago by lim6432 ▴ 60

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957

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NanoStringDiff

4.6 years ago YM • 0

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1.3k

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Bioconductor Transcriptomics NanoStringDiff

updated 5.0 years ago by Laurent Gatto 1.6k • written 5.0 years ago by Pedro ▴ 10

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1.6k

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NanoStringDiff

5.8 years ago stephen.pollo • 0

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1.2k

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NanoStringDiff GLM Gene expression

updated 6.2 years ago by James W. MacDonald 68k • written 6.2 years ago by Guillaume Robert • 0

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NanoStringDiff

updated 21 months ago by pjanas • 0 • written 6.5 years ago by noelleenright ▴ 10

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2.7k

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nanostringdiff nanostring NanoStringDiff

updated 7.4 years ago by James W. MacDonald 68k • written 7.4 years ago by casey.rimland ▴ 170

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1.7k

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nanostring NanoStringDiff design and contrast matrix differential gene expression ncounter

8.3 years ago c.kohler • 0

15 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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