Bioconductor Nanostringdiff

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2.0k

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NanoStringDiff clusterProfiler fgsea

2.4 years ago pg45863 ▴ 10

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1.7k

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DESeq2 NanoStringDiff limma

2.4 years ago pg45863 ▴ 10

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1.1k

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GEOquery MicroarrayData Normalization Microarray NanoStringDiff

updated 2.7 years ago by James W. MacDonald 68k • written 2.7 years ago by Aleksandra • 0

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817

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NanoStringDiff

updated 2.8 years ago by James W. MacDonald 68k • written 2.8 years ago by Paraskevi • 0

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883

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DifferentialExpression NanoStringDiff

3.8 years ago sanrie10 • 0

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2.3k

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limma edgeR DESeq2 NanoStringDiff

updated 4.1 years ago by James W. MacDonald 68k • written 4.1 years ago by reberya • 0

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1.4k

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Nan NanoStringDiff

4.3 years ago choijamts • 0

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2.6k

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NanoStringDiff NanoString nCounter DE analysis

updated 23 months ago by georgersmith • 0 • written 6.2 years ago by lim6432 ▴ 60

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933

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NanoStringDiff

4.6 years ago YM • 0

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1.3k

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Bioconductor Transcriptomics NanoStringDiff

updated 5.0 years ago by Laurent Gatto 1.6k • written 5.0 years ago by Pedro ▴ 10

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1.6k

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NanoStringDiff

5.7 years ago stephen.pollo • 0

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1.2k

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NanoStringDiff GLM Gene expression

updated 6.1 years ago by James W. MacDonald 68k • written 6.1 years ago by Guillaume Robert • 0

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NanoStringDiff

updated 20 months ago by pjanas • 0 • written 6.4 years ago by noelleenright ▴ 10

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2.7k

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nanostringdiff nanostring NanoStringDiff

updated 7.3 years ago by James W. MacDonald 68k • written 7.4 years ago by casey.rimland ▴ 170

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nanostring NanoStringDiff design and contrast matrix differential gene expression ncounter

8.2 years ago c.kohler • 0

15 results • Page 1 of 1

Recent ...

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Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

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Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Answer: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

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