Bioconductor Nanostringdiff

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NanoStringDiff clusterProfiler fgsea

2.3 years ago pg45863 ▴ 10

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DESeq2 NanoStringDiff limma

2.3 years ago pg45863 ▴ 10

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1.1k

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GEOquery MicroarrayData Normalization Microarray NanoStringDiff

updated 2.6 years ago by James W. MacDonald 68k • written 2.6 years ago by Aleksandra • 0

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801

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NanoStringDiff

updated 2.8 years ago by James W. MacDonald 68k • written 2.8 years ago by Paraskevi • 0

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876

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DifferentialExpression NanoStringDiff

3.8 years ago sanrie10 • 0

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limma edgeR DESeq2 NanoStringDiff

updated 4.0 years ago by James W. MacDonald 68k • written 4.0 years ago by reberya • 0

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Nan NanoStringDiff

4.2 years ago choijamts • 0

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NanoStringDiff NanoString nCounter DE analysis

updated 22 months ago by georgersmith • 0 • written 6.1 years ago by lim6432 ▴ 60

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924

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NanoStringDiff

4.5 years ago YM • 0

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1.3k

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Bioconductor Transcriptomics NanoStringDiff

updated 4.9 years ago by Laurent Gatto 1.6k • written 4.9 years ago by Pedro ▴ 10

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NanoStringDiff

5.7 years ago stephen.pollo • 0

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NanoStringDiff GLM Gene expression

updated 6.1 years ago by James W. MacDonald 68k • written 6.1 years ago by Guillaume Robert • 0

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NanoStringDiff

updated 20 months ago by pjanas • 0 • written 6.3 years ago by noelleenright ▴ 10

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nanostringdiff nanostring NanoStringDiff

updated 7.3 years ago by James W. MacDonald 68k • written 7.3 years ago by casey.rimland ▴ 170

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nanostring NanoStringDiff design and contrast matrix differential gene expression ncounter

8.2 years ago c.kohler • 0

15 results • Page 1 of 1

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Comment: Heatmap of the Count Matrix by ArnulfoByrd • 0

Perhaps PCA loadings offer a more comprehensive perspective. Now, thinking back, I recall struggling with a similar data reduction dilemma …

Answer: readBam vs read_bam_insert_metrics by James W. MacDonald 68k

Depends on what you mean by input. If you mean to ask if you use `readBam` to generate something to use as an argument to `read_bam_insert_…

Answer: How to construct a BSgenome object from a custom genome assembly using BSgenomeF by James W. MacDonald 68k

There is an example in the help page for `forgeBSgenomePkgFromTwobitFile`. Have you tried emulating that?

Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

What you describe sounds a good approach to me. I would also use sample weights (`sample.weights=TRUE` when running `voomLmFit`) and robust…

Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…

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Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

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