Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
nanostringdiff
•
reset
0
votes
0
replies
1.6k
views
fgsea/clusterProfiler Packages for nCounter data enrichment analysis
NanoStringDiff
clusterProfiler
fgsea
20 months ago
pg45863
▴ 10
0
votes
2
replies
1.3k
views
Nanostring data differential expression analysis: limma or DESeq2?
DESeq2
NanoStringDiff
limma
20 months ago
pg45863
▴ 10
0
votes
1
reply
873
views
Micro Array GEO data analysis
GEOquery
MicroarrayData
Normalization
Microarray
NanoStringDiff
updated 2.0 years ago by
James W. MacDonald
67k • written 2.0 years ago by
Aleksandra
• 0
0
votes
2
replies
698
views
NanoStringDiff contrast vectors
NanoStringDiff
updated 2.1 years ago by
James W. MacDonald
67k • written 2.1 years ago by
Paraskevi
• 0
0
votes
0
replies
747
views
NanoStringDiff
DifferentialExpression
NanoStringDiff
3.1 years ago
sanrie10
• 0
5
votes
7
replies
1.9k
views
Nanostringdiff - defining contrast values for blocking variables in glm
limma
edgeR
DESeq2
NanoStringDiff
updated 3.4 years ago by
James W. MacDonald
67k • written 3.4 years ago by
reberya
• 0
3
votes
2
replies
1.2k
views
R NanoStringDiff: DE analysis, from 2 group comparison method how "logFC" generated?
Nan
NanoStringDiff
3.6 years ago
choijamts
• 0
3
votes
6
replies
2.3k
views
Why NanoStringDiff package so slow?
NanoStringDiff
NanoString
nCounter
DE analysis
updated 15 months ago by
georgersmith
• 0 • written 5.5 years ago by
lim6432
▴ 50
0
votes
0
replies
838
views
NanoStringDiff - housekeeping genes variation
NanoStringDiff
3.9 years ago
YM
• 0
1
vote
1
reply
1.1k
views
NanoStringDiff Not Recognized as Numeric
Bioconductor
Transcriptomics
NanoStringDiff
updated 4.3 years ago by
Laurent Gatto
1.6k • written 4.3 years ago by
Pedro
▴ 10
1
vote
7
replies
1.3k
views
NanoStringDiff glm.LRT not finishing after 20 hours
NanoStringDiff
5.0 years ago
stephen.pollo
• 0
0
votes
2
replies
1.1k
views
NanoStringDiff correction for variation between patient
NanoStringDiff
GLM
Gene expression
updated 5.4 years ago by
James W. MacDonald
67k • written 5.4 years ago by
Guillaume Robert
• 0
3
votes
3
replies
1.7k
views
NanoStringDiff counts not numeric
NanoStringDiff
updated 12 months ago by
pjanas
• 0 • written 5.7 years ago by
noelleenright
▴ 10
1
vote
6
replies
2.3k
views
How to access normalized data in the NanoStringDiff package?
nanostringdiff
nanostring
NanoStringDiff
updated 6.7 years ago by
James W. MacDonald
67k • written 6.7 years ago by
casey.rimland
▴ 170
0
votes
0
replies
1.6k
views
design matrix and contrast for paired experiment using NanoStringDiff for nCounter data
nanostring
NanoStringDiff
design and contrast matrix
differential gene expression
ncounter
7.5 years ago
c.kohler
• 0
15 results • Page
1 of 1
Recent ...
Replies
Comment: input for singR function
by
iamin053
• 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Comment: build samplesheet and plot profile
by
yf
• 0
![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a
Answer: I am having issues with bowtie2_build
by
James W. MacDonald
67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues
by
Michael Love
43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
Comment: How to visualize these pathways using pathview
by
Guido Hooiveld
★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Votes
A: Doubt about the "zero expression" genes or genes with no reads at all in the co
Answer: Unable to install nloptr
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
C: How does edgeR cpm function calculate log(CPM) values?
Answer: Selection of correct coefficients or contrasts in DESeq2
Awards
• All
Popular Question
to
shepherl
4.1k
Popular Question
to
Gordon Smyth
52k
Popular Question
to
bastien_chassagnol
• 0
Popular Question
to
Maria Doyle
▴ 100
Popular Question
to
Robert Ivanek
▴ 750
Locations
• All
Canada,
24 minutes ago
Canada,
43 minutes ago
France/Marseille/Inserm,
1 hour ago
United States,
1 hour ago
United States,
1 hour ago
Traffic: 886 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6