Showing : organism • reset
0
votes
13
replies
2.9k
views
GEOmetadb and gse organism type
Cancer Breast Organism GEOmetadb Cancer Breast Organism GEOmetadb
updated 15.1 years ago by 21k • written 15.1 years ago by ▴ 180
0
votes
10
replies
1.8k
views
Interspecies differential expression of orthologs with Edger
Normalization Organism edgeR
updated 9.7 years ago by ▴ 140 • written 9.7 years ago by 50k
0
votes
10
replies
3.0k
views
PAIR files -- feature set table
Microarray Annotation Organism annotate pdInfoBuilder Microarray Annotation Organism
updated 10.9 years ago by ★ 4.3k • written 10.9 years ago by ★ 13k
0
votes
10
replies
2.8k
views
gene set enrichment
Annotation Organism Annotation Organism
updated 2.1 years ago by 50k • written 11.4 years ago by ▴ 220
0
votes
8
replies
1.2k
views
Help with base file in AnnBuilder
Annotation Organism Annotation Organism
updated 16.5 years ago by 65k • written 16.5 years ago by ▴ 410
0
votes
8
replies
2.0k
views
AnnBuilder and Kegg
Pathways GO Survival Cancer Organism annotate affydata vsn AnnBuilder globaltest GO vsn
updated 17.5 years ago by ▴ 190 • written 17.5 years ago by ★ 2.9k
0
votes
8
replies
1.2k
views
Non-model organism , CluserProfiler message "No gene can be mapped"
organism non-model
updated 19 months ago by 65k • written 19 months ago by • 0
0
votes
7
replies
1.5k
views
I have trouble running the AnnBuilder Vignette
Cancer Organism AnnBuilder Cancer Organism AnnBuilder
updated 19.5 years ago by 65k • written 19.5 years ago by ★ 2.0k
0
votes
7
replies
2.6k
views
GTF file error when using easyRNAseq�
Annotation Organism BSgenome BSgenome DESeq easyRNASeq Annotation Organism BSgenome DESeq
updated 10.5 years ago by ★ 1.2k • written 10.5 years ago by ★ 13k
0
votes
7
replies
925
views
advantages of annotation packages
Annotation GO Organism Annotation GO Organism
updated 11.0 years ago by 25k • written 11.0 years ago by ▴ 30
0
votes
7
replies
2.0k
views
Gene Ontology Annotations from Gene Names
Microarray GO Organism PROcess GOstats Microarray GO Organism PROcess GOstats
updated 10.2 years ago by 65k • written 10.3 years ago by ★ 13k
0
votes
7
replies
1.6k
views
annotation package for chicken affyprobes
Annotation Organism Gallus gallus probe AnnBuilder Annotation Organism Gallus gallus probe
updated 17.7 years ago by ▴ 180 • written 17.7 years ago by ▴ 870
0
votes
6
replies
1.3k
views
Making use of the Apis mellifera assembly 2 data in goSeq
GO Organism Apis mellifera goseq GO Organism Apis mellifera goseq
updated 12.2 years ago by 16k • written 12.2 years ago by ▴ 30
0
votes
6
replies
1.5k
views
[Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred f…
Cancer Organism biomaRt GenomicFeatures genomes Cancer Organism biomaRt GenomicFeatures
updated 12.1 years ago by ▴ 660 • written 12.2 years ago by 16k
0
votes
6
replies
1.3k
views
org.*.eg.db problem
Annotation Organism Annotation Organism
updated 13.4 years ago by 6.7k • written 13.4 years ago by ▴ 200
0
votes
6
replies
1.5k
views
adding environment variables
Organism Organism
updated 13.5 years ago by ▴ 10 • written 13.5 years ago by ▴ 280
0
votes
6
replies
1.6k
views
PdInfoBuilder for nimblegen array
Annotation Organism oligo pdInfoBuilder Annotation Organism oligo pdInfoBuilder
updated 14.2 years ago by ★ 4.3k • written 14.2 years ago by ▴ 40
0
votes
5
replies
1.6k
views
KEGG & hyperGTest: an example?
Annotation Yeast Organism Annotation Yeast Organism
updated 16.5 years ago by ▴ 150 • written 16.5 years ago by ★ 1.1k
0
votes
5
replies
1.6k
views
How does pathview deal with enzyme with several coding genes?
RNASeq Organism pathview RNASeq Organism pathview
10.2 years ago 刘鹏飞 ▴ 80
0
votes
5
replies
1.2k
views
Arabidopsis chromosome location mappings
Organism ath1121501 Organism ath1121501
updated 15.6 years ago by ▴ 10 • written 15.6 years ago by ▴ 330
0
votes
5
replies
1.6k
views
newbie problems with AnnBuilder
Annotation Organism cdf probe affy AnnBuilder Annotation Organism cdf probe affy
updated 15.5 years ago by ★ 7.2k • written 15.5 years ago by ▴ 830
0
votes
5
replies
1.4k
views
AnnBuilder problem with custom List of genes
Annotation Organism probe AnnBuilder Annotation Organism probe AnnBuilder
16.7 years ago claudio.is@libero.it ▴ 210
0
votes
4
replies
1.3k
views
Annotation data package is not being created
Annotation Organism PROcess Annotation Organism PROcess
updated 20.4 years ago by ★ 2.9k • written 20.4 years ago by ▴ 70
0
votes
4
replies
1.4k
views
Error while using AnnBuilder
Annotation GO Organism annotate AnnBuilder Annotation GO Organism annotate AnnBuilder
updated 18.3 years ago by ★ 7.4k • written 18.3 years ago by ▴ 160
0
votes
4
replies
4.3k
views
An error in oligo: All the CEL files must be of the same type??
BiocViews Annotation Organism biocViews oligo BiocViews BiocViews Annotation Organism
updated 12.9 years ago by ★ 4.3k • written 12.9 years ago by ▴ 20
2
votes
4
replies
2.7k
views
makePdInfoPackage for Primeview arrays
BiocViews Annotation Cancer Organism cdf probe affy biocViews BiocViews BiocViews Cancer
updated 10.9 years ago by ★ 3.9k • written 10.9 years ago by ▴ 140
0
votes
4
replies
1.6k
views
FeatureExpressionSet using list.files() in place of read.xysfiles()
Microarray Annotation GO Organism probe annotate limma convert pdInfoBuilder sva GO sva
updated 10.9 years ago by ★ 4.3k • written 10.9 years ago by ▴ 140
0
votes
4
replies
1.2k
views
Creating annotation package with a new database schema
Annotation GO Organism Annotation GO Organism
updated 11.5 years ago by 16k • written 11.5 years ago by ▴ 30
0
votes
4
replies
1.2k
views
Using Gostats on a new organism
Organism GOstats Organism GOstats
updated 13.9 years ago by ★ 3.4k • written 13.9 years ago by ▴ 370
0
votes
4
replies
1.8k
views
KEGGgraph
Pathways Organism graph PROcess KEGGgraph Pathways Organism graph PROcess KEGGgraph
11.5 years ago Ricardo Silva ▴ 110
0
votes
4
replies
1.1k
views
ABPkgBuilder Error; Again: Solved
Annotation GO Cancer Organism Biobase annotate AnnBuilder PROcess Annotation GO Cancer
updated 18.7 years ago by ★ 7.4k • written 18.7 years ago by ▴ 250
0
votes
4
replies
1.0k
views
missing AnnBuilder parser
Annotation Organism annotate AnnBuilder Annotation Organism annotate AnnBuilder
updated 19.1 years ago by ★ 2.9k • written 19.1 years ago by ★ 1.3k
0
votes
4
replies
8.1k
views
DESeq adjusted pvalue calculation / filtering data
Sequencing Organism qvalue DESeq Sequencing Organism qvalue DESeq
updated 12.4 years ago by ★ 6.0k • written 12.5 years ago by ▴ 20
0
votes
4
replies
1.7k
views
easyRNASeq error
Sequencing Alignment Annotation Organism BSgenome biomaRt BSgenome easyRNASeq Sequencing
12.2 years ago delhomme@embl.de ★ 1.2k
0
votes
4
replies
1.4k
views
cluster a set of genes based on another set of genes
Organism limma Organism limma
updated 17.2 years ago by ▴ 280 • written 17.2 years ago by ▴ 450
0
votes
4
replies
1.6k
views
Using GOstats for a non-model organism
GO Organism GO Organism
updated 13.2 years ago by 65k • written 13.2 years ago by ▴ 30
1
vote
4
replies
1.8k
views
Consensus sequence
Organism
updated 9.7 years ago by 16k • written 9.7 years ago by 65k
0
votes
3
replies
1.2k
views
defining accessors (cols, keys, keytypes, select) for annotation package built with AnnotationForge package
Annotation GO Organism AnnotationDbi Annotation GO Organism AnnotationDbi
10.7 years ago Sashi ▴ 20
0
votes
3
replies
1.7k
views
Fwd: Re: which package can do GSEA for no model organism
Annotation GO Organism ASSIGN Annotation GO Organism ASSIGN
updated 14.9 years ago by ▴ 40 • written 14.9 years ago by ▴ 340
0
votes
3
replies
1.5k
views
TranscriptDb object to RangedData for ChIPpeakAnno
Annotation GO AnnotationData Organism BSgenome TranscriptDb convert BSgenome ChIPpeakAnno
10.8 years ago Alan Smith ▴ 150
1
vote
3
replies
1.7k
views
Bug in makeOrgPackageFromNCBI from AnnotationForge?
Alignment Annotation Organism Schizosaccharomyces pombe biomaRt AnnotationForge Alignment
updated 10.7 years ago by ★ 7.2k • written 10.7 years ago by ▴ 220
0
votes
3
replies
837
views
Finding Annotation of CEL file formats
Organism probe Organism probe
updated 15.6 years ago by ★ 3.9k • written 15.6 years ago by ▴ 230
0
votes
3
replies
1.5k
views
AnnBuilder/ABPkgBuilder: lots of Errors
Annotation GO Cancer Organism Biobase annotate AnnBuilder PROcess bridge Annotation GO
updated 19.7 years ago by ★ 2.9k • written 19.7 years ago by ▴ 90
0
votes
3
replies
1.4k
views
find overlaping genes in ENSEMBL gene ID list and NCBI gene ID list
Organism Bos taurus Organism Bos taurus
updated 13.2 years ago by ★ 7.2k • written 13.2 years ago by ▴ 150
0
votes
3
replies
1.6k
views
[BioMart Users] biomaRt returning multiple columns out of order
Organism Arabidopsis thaliana biomaRt Organism Arabidopsis thaliana biomaRt
updated 12.6 years ago by 1.6k • written 12.6 years ago by ▴ 20
0
votes
3
replies
1.6k
views
CGHcall error
Cancer Organism MANOR oligo CGHcall BAC Cancer Organism MANOR oligo CGHcall BAC
updated 16.3 years ago by ★ 2.4k • written 16.3 years ago by ▴ 110
0
votes
3
replies
1.7k
views
BLAST - annotate package?
Organism Organism
updated 11.7 years ago by 65k • written 11.7 years ago by ★ 1.1k
0
votes
3
replies
1.4k
views
RpsiXML issues with latest Biogrid release files
GO Organism Arabidopsis thaliana graph RpsiXML GO Organism Arabidopsis thaliana graph
updated 14.4 years ago by ▴ 340 • written 14.4 years ago by ▴ 60
0
votes
3
replies
1.1k
views
error in gene2pathway results
Organism gene2pathway Organism gene2pathway
updated 14.1 years ago by ★ 7.2k • written 14.1 years ago by ▴ 420
0
votes
3
replies
1.2k
views
Building the tomato annotation library(Affy)
Annotation Organism AnnBuilder Annotation Organism AnnBuilder
17.0 years ago Groot, Philip de ▴ 630
50 results • Page 1 of 1
Recent ...
Replies
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
Awards • All
Popular Question to Gordon Smyth 50k
Popular Question to Zainab • 0
Popular Question to Theo ▴ 10
Popular Question to gene_bioconductor ▴ 10
Popular Question to rohitsatyam102 ▴ 20
Locations • All
United States, 8 minutes ago
WEHI, Melbourne, Australia, 19 minutes ago
United States, 38 minutes ago
France, 50 minutes ago
The city by the bay, 1 hour ago
Traffic: 579 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6