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parallel
•
reset
6
votes
12
replies
1.9k
views
mclapply to loop over a GRangesList object
GenomicRanges
GRanges
GRangesList
parallel
mclapply
5.3 years ago
foehn
▴ 100
2
votes
4
replies
1.4k
views
Running HTSFilter in paralell
htsfilter
parallel
updated 8.4 years ago by
andrea.rau
▴ 80 • written 8.4 years ago by
Richard Yanicky
▴ 10
1
vote
5
replies
2.4k
views
DiffBind does not run in parallel
diffbind
parallel
biocparallel
updated 6.3 years ago by
Rory Stark
★ 5.2k • written 6.3 years ago by
eggrandio
• 0
0
votes
4
replies
1.6k
views
DESeq2 using many cores despite parallel = FALSE
deseq2
parallel
updated 4.6 years ago by
Michael Love
42k • written 4.6 years ago by
symbiologist
• 0
1
vote
6
replies
1.6k
views
Multithreading problems with qalign
quasr
parallel
updated 7.5 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 7.5 years ago by
kirt.onthank
• 0
7
votes
4
replies
1.7k
views
How does BiocParallel export variables to threads?
BiocParallel
SnowParam
parallel
updated 3.9 years ago by
Martin Morgan
25k • written 3.9 years ago by
gabriel.hoffman
▴ 110
1
vote
1
reply
1.4k
views
DiffBind error with background=TRUE in dba.normalize?
BiocParallel
DiffBind
parallel
updated 3.4 years ago by
Rory Stark
★ 5.2k • written 3.4 years ago by
Victor
• 0
0
votes
1
reply
989
views
Running limma in parallel
parallel
R
limma
EWAS
updated 2.2 years ago by
Gordon Smyth
50k • written 2.2 years ago by
Lorenzo
• 0
3
votes
4
replies
1.4k
views
DiffBind (Error in if (DBA$config$parallelPackage))
parallel
R
DiffBind
updated 2.5 years ago by
Rory Stark
★ 5.2k • written 2.7 years ago by
eggrandio
• 0
2
votes
10
replies
2.1k
views
Correct way to load a package inside bplapply function
parallel
biocparallel
6.8 years ago
felix.ernst
• 0
4
votes
1
reply
1.3k
views
Parallel Join Excessively Slow
biocparallel
curatedmetagenomicdata
parallel
dplyr
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
Lucas Schiffer
▴ 240
1
vote
1
reply
1.5k
views
sva: Parallel execution of sva()-function fails.
sva
parallel
updated 7.3 years ago by
Martin Morgan
25k • written 7.3 years ago by
maltethodberg
▴ 180
1
vote
1
reply
1.0k
views
trigger package fails at parallalization - Transcriptional Regulatory Inference from Genetics of ExpRession
trigger
parallel
processing
multicore
updated 9.6 years ago by
Valerie Obenchain
★ 6.8k • written 9.6 years ago by
affennacken
• 0
3
votes
3
replies
1.6k
views
BiocParallel: zombie processes on FORK cluster
biocparallel
parallel
updated 6.4 years ago by
Martin Morgan
25k • written 6.4 years ago by
alserg
▴ 260
0
votes
1
reply
987
views
DiffBind count warning
diffbind
parallel
updated 6.3 years ago by
Rory Stark
★ 5.2k • written 6.3 years ago by
ghosos
• 0
0
votes
1
reply
1.2k
views
BiocParallel and variable scope in child processes
parallel
variable scope
fork
BiocParallel
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
dan.gatti
• 0
0
votes
0
replies
614
views
set.seed in function vs clusterSetRNGStream: switching from one to another
parallel
seed
23 months ago
ZheFrench
▴ 60
0
votes
1
reply
1.3k
views
News:
Course Announcement: Use R / Bioconductor for Sequence Analysis (Intermediate Course)
Course
RNA-Seq
Chip-seq
Parallel
News
9.2 years ago
Martin Morgan
25k
0
votes
1
reply
1.2k
views
Paralelization of maSigPro
maSigPro
parallel
8.6 years ago
gmdc
• 0
0
votes
3
replies
1.7k
views
DEXSeqHTML parallelization error
Parallel
DEXSeq
DEXSeqHTML
8.5 years ago
Neel Aluru
▴ 460
0
votes
4
replies
1.4k
views
Using iterators and foreach with doMC, using DNAStringSets
dnastringset
parallel
iterators
8.4 years ago
ben.ward
▴ 30
0
votes
9
replies
2.2k
views
problem using >3 clusters with Quasr
quasr
parallel
updated 8.3 years ago by
Martin Morgan
25k • written 8.3 years ago by
rna seq
▴ 90
0
votes
1
reply
1.2k
views
error when genomeFile too big when running Quasr on >3 clusters
quasr
parallel
cluster
8.3 years ago
rna seq
▴ 90
2
votes
3
replies
2.8k
views
BiocParallel::bplapply() performance with MulticoreParam() is worse than mclapply()
biocparallel
parallel
7.0 years ago
davide risso
▴ 950
1
vote
0
replies
1.5k
views
Problems running oligo functions in parallel on a linux computer
biocparallel
oligo
rma
linux
parallel
6.4 years ago
s.munster
▴ 40
0
votes
0
replies
1.2k
views
miR2Pathway Finite Observations
pathway analysis
mirna
parallel
6.2 years ago
genomic8328
▴ 10
0
votes
1
reply
543
views
Using multiple cores SCTensor package
SCTensor
Single Cell RNA Seq
Parallel
4.5 years ago
ieuangw
• 0
27 results • Page
1 of 1
Recent ...
Replies
Comment: recount3 problem downloading data from source sra
by
PABLO ANTONIO
• 0
Hello Leonardo, Thanks for commenting on possible solutions. I noticed comparing your session info that I was using the previous version o…
Comment: seqlevelsStyle() not working
by
websterdelacruz2087055
• 0
Specify the new URL new_url <- "https://hgdownload2.cse.ucsc.edu/goldenPath/hg19/database/chromInfo.txt.gz" Use the new URL to download th…
Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Yes, thank you. I have another error now, may you please guide me. here is the code that I used till using vep: ```r # bam_path <- "~/pat…
Comment: slingshot: error with plot3d.SlingshotDataSet
by
Happiness
• 0
Hi please i am encountering similar issue how did you fix it. Here is the code: ## Run Slingshot p3.neuron.sds <- slingshot(Embeddings(…
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
by
mohammedtoufiq91
▴ 10
https://support.bioconductor.org/u/5106/ thank you very much.
Votes
Answer: Multiple factor DSEq2 result generates weird volcano plot
DESeq2 for single cell pseudobulk processing
Simultaneously adding two different covariates in the model gives error in DESeq2.
How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: recount3 problem downloading data from source sra
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