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pcatools
•
reset
0
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0
replies
288
views
Problem with PCAtool as dependencie
COTAN
PCAtools
12 months ago
Silvia
• 0
1
vote
2
replies
1.2k
views
How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2
eigencorplot
PCAtools
20 months ago
BioinfGuru
▴ 70
0
votes
2
replies
800
views
PCA plot suggestions
DESeq2
PCAtools
updated 21 months ago by
Michael Love
43k • written 21 months ago by
Aaliya
• 0
0
votes
7
replies
2.9k
views
DESeq2 output used for PCA plot on R studio
DESeq2
RSTUDIO
PCAtools
updated 21 months ago by
swbarnes2
★ 1.4k • written 21 months ago by
Aaliya
• 0
3
votes
6
replies
2.5k
views
Differing results from plotMDS and PCAtools
edgeR
PCAtools
written 22 months ago by
Fabian
• 0
4
votes
8
replies
6.6k
views
Interpreting ellipses in PCAtools for bulk RNAseq
ellipse
RNAseq
PCAtools
updated 2.8 years ago by
CP
• 0 • written 4.7 years ago by
elizabethe819
• 0
1
vote
3
replies
2.2k
views
Adding ellipse in PCAtools biplot
Biplot
FactoMineR
proteomics
PCAtools
ellipse
updated 3.0 years ago by
Kevin Blighe
★ 4.0k • written 3.0 years ago by
M Tuhin
• 0
1
vote
1
reply
2.1k
views
PCA input data from DRAGEN RNA pipeline
illumina
PCAtools
PCA
updated 3.2 years ago by
Kevin Blighe
★ 4.0k • written 3.2 years ago by
ilaria.debenedictis
• 0
0
votes
1
reply
1.4k
views
Attempt to install bioconductor 3.15, PCAtools
PCAtools
bioconductor
updated 3.5 years ago by
James W. MacDonald
68k • written 3.5 years ago by
pterry
• 0
0
votes
3
replies
2.6k
views
I got error when visualizing my PCA
PCAtools
pcaExplorer
pcaMethods
updated 3.6 years ago by
Federico Marini
▴ 180 • written 3.6 years ago by
m610110001
• 0
5
votes
6
replies
4.5k
views
Large difference in PCA plot based on LCPM (log counts per million) and VST (variance stabilizing transformations)
PCAtools
edgeR
pcaExplorer
RNASeq
RNAseq123
3.8 years ago
Alan
• 0
3
votes
2
replies
1.5k
views
PCAtools lables missing or out of the plot
PCAtools
4.8 years ago
luca.s
▴ 50
3
votes
3
replies
4.1k
views
PCAtools - change colour of points
PCAtools
updated 5.0 years ago by
Kevin Blighe
★ 4.0k • written 5.0 years ago by
Terra
• 0
3
votes
15
replies
4.7k
views
How to ellipse a subset of data PCA biplot?
biplot
PCA
RNASeq
PCAtools
updated 5.1 years ago by
Kevin Blighe
★ 4.0k • written 5.1 years ago by
mschmidt
▴ 10
0
votes
1
reply
2.7k
views
Perform a biplot from pcaData and coldata in DESeq2, maybe PCAtools?
PCAtools
biplot
DESeq2
RNASeq
PCA
updated 5.2 years ago by
Kevin Blighe
★ 4.0k • written 5.2 years ago by
ecg1g15
▴ 30
1
vote
3
replies
2.2k
views
PCATools: is it possible to output a single legend when using pairsplot()?
PCATools
updated 5.3 years ago by
Kevin Blighe
★ 4.0k • written 5.3 years ago by
oakhamwolf
• 0
2
votes
4
replies
2.6k
views
Comparing discrete variable to PCA
EDA
pcaExplorer
PCAtools
PCA
updated 4.1 years ago by
Miguel
▴ 20 • written 5.4 years ago by
k.vitting.seerup
▴ 120
17 results • Page
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Comment: Confirm that OpenStats will not be archived (pryr dependency)
by
Marina
• 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error
by
ansley.r.burtch
• 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Comment: limpa analysis advice
by
Gordon Smyth
53k
I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…
Answer: Confirm that OpenStats will not be archived (pryr dependency)
by
shepherl
4.3k
As long as OpenStats is building cleanly and all needed stated dependencies are on CRAN or Bioconductor, OpenStats will not be archived. I…
Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq
by
Michael Love
43k
Yes, I find that the LFC shrinkage and its corresponding stat `svalue` if you use lfcShrink with a threshold often returns more reliable ge…
Votes
Comment: limpa analysis advice
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
Answer: Array weights in dpcDE
Answer: Array weights in dpcDE
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