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pcatools
•
reset
0
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0
replies
203
views
Problem with PCAtool as dependencie
COTAN
PCAtools
8 months ago
Silvia
• 0
1
vote
2
replies
1.1k
views
How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2
eigencorplot
PCAtools
17 months ago
BioinfGuru
▴ 70
0
votes
2
replies
695
views
PCA plot suggestions
DESeq2
PCAtools
updated 17 months ago by
Michael Love
43k • written 17 months ago by
Aaliya
• 0
0
votes
7
replies
2.6k
views
DESeq2 output used for PCA plot on R studio
DESeq2
RSTUDIO
PCAtools
updated 17 months ago by
swbarnes2
★ 1.4k • written 17 months ago by
Aaliya
• 0
3
votes
6
replies
2.2k
views
Differing results from plotMDS and PCAtools
edgeR
PCAtools
written 18 months ago by
Fabian
• 0
4
votes
8
replies
6.0k
views
Interpreting ellipses in PCAtools for bulk RNAseq
ellipse
RNAseq
PCAtools
updated 2.5 years ago by
CP
• 0 • written 4.4 years ago by
elizabethe819
• 0
1
vote
3
replies
2.0k
views
Adding ellipse in PCAtools biplot
Biplot
FactoMineR
proteomics
PCAtools
ellipse
updated 2.7 years ago by
Kevin Blighe
★ 4.0k • written 2.7 years ago by
M Tuhin
• 0
1
vote
1
reply
1.9k
views
PCA input data from DRAGEN RNA pipeline
illumina
PCAtools
PCA
updated 2.9 years ago by
Kevin Blighe
★ 4.0k • written 2.9 years ago by
ilaria.debenedictis
• 0
0
votes
1
reply
1.2k
views
Attempt to install bioconductor 3.15, PCAtools
PCAtools
bioconductor
updated 3.2 years ago by
James W. MacDonald
68k • written 3.2 years ago by
pterry
• 0
0
votes
3
replies
2.3k
views
I got error when visualizing my PCA
PCAtools
pcaExplorer
pcaMethods
updated 3.3 years ago by
Federico Marini
▴ 180 • written 3.3 years ago by
m610110001
• 0
5
votes
6
replies
4.2k
views
Large difference in PCA plot based on LCPM (log counts per million) and VST (variance stabilizing transformations)
PCAtools
edgeR
pcaExplorer
RNASeq
RNAseq123
3.5 years ago
Alan
• 0
3
votes
2
replies
1.3k
views
PCAtools lables missing or out of the plot
PCAtools
4.5 years ago
luca.s
▴ 50
3
votes
3
replies
3.9k
views
PCAtools - change colour of points
PCAtools
updated 4.7 years ago by
Kevin Blighe
★ 4.0k • written 4.7 years ago by
Terra
• 0
3
votes
15
replies
4.4k
views
How to ellipse a subset of data PCA biplot?
biplot
PCA
RNASeq
PCAtools
updated 4.8 years ago by
Kevin Blighe
★ 4.0k • written 4.8 years ago by
mschmidt
▴ 10
0
votes
1
reply
2.5k
views
Perform a biplot from pcaData and coldata in DESeq2, maybe PCAtools?
PCAtools
biplot
DESeq2
RNASeq
PCA
updated 4.9 years ago by
Kevin Blighe
★ 4.0k • written 4.9 years ago by
ecg1g15
▴ 30
1
vote
3
replies
2.1k
views
PCATools: is it possible to output a single legend when using pairsplot()?
PCATools
updated 5.0 years ago by
Kevin Blighe
★ 4.0k • written 5.0 years ago by
oakhamwolf
• 0
2
votes
4
replies
2.4k
views
Comparing discrete variable to PCA
EDA
pcaExplorer
PCAtools
PCA
updated 3.8 years ago by
Miguel
▴ 20 • written 5.1 years ago by
k.vitting.seerup
▴ 120
17 results • Page
1 of 1
Recent ...
Replies
Comment: Help with defining groups
by
Phinney, Brett
▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness
by
massimo
• 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package
by
ksankaran
• 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
ATpoint
★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
ATpoint
★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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