Bioconductor Pcatools

Showing : pcatools • reset

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COTAN PCAtools

11 days ago Silvia • 0

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710

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DESeq2 eigencorplot PCAtools

8 months ago BioinfGuru ▴ 70

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482

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DESeq2 PCAtools

updated 9 months ago by Michael Love 43k • written 9 months ago by Aaliya • 0

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1.6k

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DESeq2 RSTUDIO PCAtools

updated 9 months ago by swbarnes2 ★ 1.4k • written 9 months ago by Aaliya • 0

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1.5k

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edgeR PCAtools

written 10 months ago by Fabian • 0

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5.0k

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ellipse RNAseq PCAtools

updated 22 months ago by CP • 0 • written 3.7 years ago by elizabethe819 • 0

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1.6k

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Biplot FactoMineR proteomics PCAtools ellipse

updated 2.0 years ago by Kevin Blighe ★ 4.0k • written 2.0 years ago by M Tuhin • 0

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1.4k

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illumina PCAtools PCA

updated 2.2 years ago by Kevin Blighe ★ 4.0k • written 2.2 years ago by ilaria.debenedictis • 0

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1.1k

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PCAtools bioconductor

updated 2.5 years ago by James W. MacDonald 67k • written 2.5 years ago by pterry • 0

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1.7k

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PCAtools pcaExplorer pcaMethods

updated 2.6 years ago by Federico Marini ▴ 180 • written 2.6 years ago by m610110001 • 0

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3.5k

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PCAtools edgeR pcaExplorer RNASeq RNAseq123

2.8 years ago Alan • 0

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1.1k

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PCAtools

3.9 years ago luca.s ▴ 50

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3.4k

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PCAtools

updated 4.0 years ago by Kevin Blighe ★ 4.0k • written 4.0 years ago by Terra • 0

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3.8k

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biplot PCA RNASeq PCAtools

updated 4.1 years ago by Kevin Blighe ★ 4.0k • written 4.1 years ago by mschmidt ▴ 10

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2.2k

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PCAtools biplot DESeq2 RNASeq PCA

updated 4.2 years ago by Kevin Blighe ★ 4.0k • written 4.2 years ago by ecg1g15 ▴ 30

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1.8k

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PCATools

updated 4.3 years ago by Kevin Blighe ★ 4.0k • written 4.3 years ago by oakhamwolf • 0

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2.0k

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EDA pcaExplorer PCAtools PCA

updated 3.1 years ago by Miguel ▴ 20 • written 4.5 years ago by k.vitting.seerup ▴ 120

17 results • Page 1 of 1

Recent ...

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Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Votes

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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