Bioconductor Pcatools

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219

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COTAN PCAtools

9 months ago Silvia • 0

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1.1k

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DESeq2 eigencorplot PCAtools

17 months ago BioinfGuru ▴ 70

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710

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DESeq2 PCAtools

updated 18 months ago by Michael Love 43k • written 18 months ago by Aaliya • 0

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2.6k

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DESeq2 RSTUDIO PCAtools

updated 18 months ago by swbarnes2 ★ 1.4k • written 18 months ago by Aaliya • 0

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2.2k

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edgeR PCAtools

written 19 months ago by Fabian • 0

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6.1k

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ellipse RNAseq PCAtools

updated 2.6 years ago by CP • 0 • written 4.4 years ago by elizabethe819 • 0

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2.0k

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Biplot FactoMineR proteomics PCAtools ellipse

updated 2.8 years ago by Kevin Blighe ★ 4.0k • written 2.8 years ago by M Tuhin • 0

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1.9k

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illumina PCAtools PCA

updated 3.0 years ago by Kevin Blighe ★ 4.0k • written 3.0 years ago by ilaria.debenedictis • 0

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1.3k

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PCAtools bioconductor

updated 3.3 years ago by James W. MacDonald 68k • written 3.3 years ago by pterry • 0

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2.4k

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PCAtools pcaExplorer pcaMethods

updated 3.4 years ago by Federico Marini ▴ 180 • written 3.4 years ago by m610110001 • 0

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4.2k

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PCAtools edgeR pcaExplorer RNASeq RNAseq123

3.5 years ago Alan • 0

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1.3k

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PCAtools

4.6 years ago luca.s ▴ 50

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3.9k

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PCAtools

updated 4.8 years ago by Kevin Blighe ★ 4.0k • written 4.8 years ago by Terra • 0

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4.5k

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biplot PCA RNASeq PCAtools

updated 4.9 years ago by Kevin Blighe ★ 4.0k • written 4.9 years ago by mschmidt ▴ 10

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2.5k

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PCAtools biplot DESeq2 RNASeq PCA

updated 4.9 years ago by Kevin Blighe ★ 4.0k • written 4.9 years ago by ecg1g15 ▴ 30

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2.1k

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PCATools

updated 5.0 years ago by Kevin Blighe ★ 4.0k • written 5.0 years ago by oakhamwolf • 0

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2.5k

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EDA pcaExplorer PCAtools PCA

updated 3.9 years ago by Miguel ▴ 20 • written 5.2 years ago by k.vitting.seerup ▴ 120

17 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Votes

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

A: Multi-level experiments in Limma

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