Bioconductor Pcatools

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3.2k

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biplot PCA RNASeq PCAtools

updated 3.4 years ago by Kevin Blighe ★ 3.9k • written 3.4 years ago by mschmidt ▴ 10

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3.6k

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ellipse RNAseq PCAtools

updated 13 months ago by CP • 0 • written 3.0 years ago by elizabethe819 • 0

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348

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DESeq2 RSTUDIO PCAtools

updated 11 days ago by swbarnes2 ★ 1.3k • written 13 days ago by Aaliya • 0

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2.5k

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PCAtools edgeR pcaExplorer RNASeq RNAseq123

2.1 years ago Alan • 0

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388

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edgeR PCAtools

updated 5 weeks ago by Gordon Smyth 50k • written 5 weeks ago by Fabian • 0

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1.6k

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EDA pcaExplorer PCAtools PCA

updated 2.4 years ago by Miguel ▴ 10 • written 3.7 years ago by k.vitting.seerup ▴ 120

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1.2k

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Biplot FactoMineR proteomics PCAtools ellipse

updated 15 months ago by Kevin Blighe ★ 3.9k • written 15 months ago by M Tuhin • 0

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1.2k

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PCAtools pcaExplorer pcaMethods

updated 22 months ago by Federico Marini ▴ 150 • written 22 months ago by m610110001 • 0

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2.6k

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PCAtools

updated 3.3 years ago by Kevin Blighe ★ 3.9k • written 3.3 years ago by Terra • 0

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1.4k

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PCATools

updated 3.5 years ago by Kevin Blighe ★ 3.9k • written 3.5 years ago by oakhamwolf • 0

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210

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DESeq2 PCAtools

updated 10 days ago by Michael Love 41k • written 11 days ago by Aaliya • 0

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839

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PCAtools

3.1 years ago luca.s ▴ 50

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1.7k

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PCAtools biplot DESeq2 RNASeq PCA

updated 3.4 years ago by Kevin Blighe ★ 3.9k • written 3.4 years ago by ecg1g15 ▴ 20

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862

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PCAtools bioconductor

updated 21 months ago by James W. MacDonald 65k • written 21 months ago by pterry • 0

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956

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illumina PCAtools PCA

updated 17 months ago by Kevin Blighe ★ 3.9k • written 17 months ago by ilaria.debenedictis • 0

15 results • Page 1 of 1

Recent ...

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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …

Comment: Help with running egsea() by James W. MacDonald 65k

Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…

Comment: Help with running egsea() by Chris • 0

Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…

Comment: Help with running egsea() by James W. MacDonald 65k

I don't understand the last question, but do look at the msigdb.gsets argument to `buildIdx` in the help page for that function.

Votes

Comment: Help with running egsea()

Answer: Trim/Filter out-of-bounds GRanges

Comment: Help with running egsea()

Answer: How to save the DEXSeq results

Awards • All

Scholar to Michael Love 41k

Popular Question to Malcolm Cook ★ 1.6k

Teacher to Gordon Smyth 50k