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plotmds
•
reset
1
vote
2
replies
1.5k
views
loading scores using plotMDS in limma
plotMDS
limma
2.1 years ago
Cen
• 0
1
vote
3
replies
4.8k
views
Making MDS plot
plotMDS
limma
updated 2.2 years ago by
Gordon Smyth
52k • written 2.2 years ago by
liujy4
• 0
2
votes
2
replies
2.0k
views
Make samples symbols bigger in PCA / MDS analysis with plotMDS function
plotMDS
PCA
RNASeq
MDS
updated 3.4 years ago by
Gordon Smyth
52k • written 3.5 years ago by
Raito92
▴ 60
2
votes
2
replies
1.7k
views
plotMDS dimensions bug
limma
plotMDS
4.1 years ago
jamie.gearing
▴ 60
2
votes
8
replies
5.2k
views
MDS Plot help in edgeR
edgeR
plotmds
differential gene expression
MDS
mdsplot
updated 6.7 years ago by
Gordon Smyth
52k • written 6.7 years ago by
ilovesuperheroes1993
• 0
0
votes
1
reply
990
views
Visualization of analysis of multiple cell lines
plotMDS
Cell lines
limma
updated 7.0 years ago by
Gordon Smyth
52k • written 7.0 years ago by
Alexander Azarian
▴ 30
0
votes
0
replies
1.2k
views
Using log2FC distance matrix in Boot.Phylo to create bootstrapped trees
tree
bootstrap
dgelist
plotmds
7.5 years ago
Larry K.
• 0
3
votes
7
replies
7.1k
views
Limma PlotMDS: what values should be used?
limma
edger
plotmds
tmm
masigpro
7.7 years ago
dacaba.92
▴ 10
4
votes
6
replies
2.1k
views
EdgeR: Replicate samples diverge in MDS plot
edger
plotmds
7.9 years ago
fawazfebin
▴ 60
3
votes
1
reply
2.4k
views
column nubering plotMDS
edger
plotmds
updated 7.9 years ago by
Aaron Lun
★ 29k • written 7.9 years ago by
mictadlo
▴ 10
1
vote
1
reply
2.0k
views
Inspection of batch effect correction success with ComBat in R, regarding a merged dataset comprised of 4 different batches
affymetrix microarrays
sva
combat sva
batch effect
plotMDS
updated 9.0 years ago by
Jeff Leek
▴ 650 • written 9.0 years ago by
svlachavas
▴ 840
0
votes
0
replies
1.4k
views
Is it possible to make some spheres around groups of points (plot3d) and measure distances between them?
rgl
plot3d
plotmds
9.4 years ago
Adam
• 0
12 results • Page
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Comment: Biological Pathway Database
by
peterparkerrbu
• 0
Having the pathways available in PowerPoint format is a huge plus, as it makes them easy to use for presentations and teaching. The ability…
Comment: WGCNA analysis on RNAseq and proteoimcs data
by
sum31278
• 0
Hi sagigordon, Can you share how you performed WGCNA analysis for proteomics data? Thanks
Comment: European Bioconductor Conference 2023 planning
by
inadequate.peacock.iiag
• 0
I once faced a dilemma similar to this when coordinating a smaller local event; despite initial hesitation, I learned invaluable skills and…
Comment: ROAST compare results with complex design
by
Gordon Smyth
52k
It's also worth pointing out that the syntax for `camera` and `mroast` is the same, so I wonder how OP did the earlier `camera` analysis.
Answer: ROAST compare results with complex design
by
James W. MacDonald
68k
You are specifying that the last column of your design should be used as the contrast. You should instead use `contrast[,1]`, which will us…
Votes
Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
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