Bioconductor Plotmds

Showing : plotmds • reset

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1.6k

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plotMDS limma

2.4 years ago Cen • 0

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5.0k

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plotMDS limma

updated 2.5 years ago by Gordon Smyth 53k • written 2.5 years ago by liujy4 • 0

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2.1k

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plotMDS PCA RNASeq MDS

updated 3.8 years ago by Gordon Smyth 53k • written 3.8 years ago by Raito92 ▴ 60

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1.8k

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limma plotMDS

4.4 years ago jamie.gearing ▴ 60

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5.4k

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edgeR plotmds differential gene expression MDS mdsplot

updated 7.0 years ago by Gordon Smyth 53k • written 7.0 years ago by ilovesuperheroes1993 • 0

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1.1k

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plotMDS Cell lines limma

updated 7.3 years ago by Gordon Smyth 53k • written 7.3 years ago by Alexander Azarian ▴ 30

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1.4k

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tree bootstrap dgelist plotmds

7.8 years ago Larry K. • 0

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7.3k

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limma edger plotmds tmm masigpro

8.0 years ago dacaba.92 ▴ 10

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2.3k

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edger plotmds

8.2 years ago fawazfebin ▴ 60

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2.5k

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edger plotmds

updated 8.2 years ago by Aaron Lun ★ 29k • written 8.2 years ago by mictadlo ▴ 10

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2.1k

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affymetrix microarrays sva combat sva batch effect plotMDS

updated 9.3 years ago by Jeff Leek ▴ 650 • written 9.3 years ago by svlachavas ▴ 840

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1.5k

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rgl plot3d plotmds

9.7 years ago Adam • 0

12 results • Page 1 of 1

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Comment: Bioinformatician at the Lausanne University Hospital by TikTsokaasocissalpc • 0

The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …

Comment: DECIPHER DesignProbes unable to design FISH-probes by TikTsokaasocissalpc • 0

If you want to share your research progress and microbiome discoveries with colleagues or friends, [snaptroid android][1] download free mak…

Answer: Limma-voom sample weights and impact on DEG numbers by Gordon Smyth 53k

I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…

Answer: wgcna module preseravtion taking too long? by ATpoint ★ 5.0k

WGCNA is not a Bioconductor package, you won't get an answer here. Consider biostars.org or the r/bioinformatics reddit. Note that 10 sampl…

Answer: Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCP by victor04052024 • 0

You write quite well, and the content is very interesting. I'll provide you a link to my page [granny 2](https://granny2.io).

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Limma-voom sample weights and impact on DEG numbers

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

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