Bioconductor Plotmds

Showing : plotmds • reset

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1.7k

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plotMDS limma

2.5 years ago Cen • 0

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5.1k

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plotMDS limma

updated 2.6 years ago by Gordon Smyth 53k • written 2.6 years ago by liujy4 • 0

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2.1k

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plotMDS PCA RNASeq MDS

updated 3.8 years ago by Gordon Smyth 53k • written 3.8 years ago by Raito92 ▴ 60

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1.9k

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limma plotMDS

4.5 years ago jamie.gearing ▴ 60

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5.5k

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edgeR plotmds differential gene expression MDS mdsplot

updated 7.0 years ago by Gordon Smyth 53k • written 7.0 years ago by ilovesuperheroes1993 • 0

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1.1k

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plotMDS Cell lines limma

updated 7.4 years ago by Gordon Smyth 53k • written 7.4 years ago by Alexander Azarian ▴ 30

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1.4k

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tree bootstrap dgelist plotmds

7.9 years ago Larry K. • 0

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7.4k

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limma edger plotmds tmm masigpro

8.1 years ago dacaba.92 ▴ 10

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2.3k

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edger plotmds

8.3 years ago fawazfebin ▴ 60

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2.5k

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edger plotmds

updated 8.3 years ago by Aaron Lun ★ 29k • written 8.3 years ago by mictadlo ▴ 10

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2.2k

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affymetrix microarrays sva combat sva batch effect plotMDS

updated 9.4 years ago by Jeff Leek ▴ 650 • written 9.4 years ago by svlachavas ▴ 840

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1.5k

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rgl plot3d plotmds

9.8 years ago Adam • 0

12 results • Page 1 of 1

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Comment: chemmineOB install help by Jeremy • 0

I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

I don't think DESeq2 has the ability to do multi-contrast comparisons, at least based on what I can understand of the manual; I can pick mu…

Votes

A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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