Bioconductor Proteomics

Showing : proteomics • reset

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484

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Proteomics limma

updated 10 days ago by James W. MacDonald 65k • written 13 days ago by Abbey • 0

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228

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DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq

updated 18 days ago by ATpoint ★ 4.1k • written 18 days ago by james.zhang20 • 0

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252

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Proteomics JobPosting SingleCell Spatial SpatialExperiment

10 weeks ago Peter Hickey ▴ 740

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3.8k

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Proteomics NPX limma

updated 3 months ago by briankleiboeker • 0 • written 3.2 years ago by r.i.s.alnuwaysir ▴ 10

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2.3k

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mass spectrometry proteomics metabolomics Tutorial

written 3.6 years ago by Johannes Rainer ★ 2.0k

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219

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Proteomics ProteoMM ProteomicsWorkflow Proteome

written 5 months ago by ary.lech ▴ 10

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262

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Bioconductor Proteomics

5 months ago Joshua • 0

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1.4k

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RNAseq deseq2 proteomics transcriptomics workshop News

written 5.2 years ago by Laurent Gatto 1.6k

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774

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Proteomics proDA MultipleComparison

8 months ago t.b.n.nguyen-9 • 0

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463

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Proteomics DifferentialRegulation limma

8 months ago svlachavas ▴ 830

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2.9k

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differential expression proteomics

updated 9 months ago by ATpoint ★ 4.1k • written 6.4 years ago by cardin.julie • 0

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769

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RforProteomics Proteomics ProteomicsWorkflow

updated 9 months ago by Laurent Gatto 1.6k • written 9 months ago by mmvar • 0

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636

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Proteomics RforProteomics ProteomicsWorkflow Spectra MassSpectrometryData

updated 9 months ago by Laurent Gatto 1.6k • written 9 months ago by mmvar • 0

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836

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Proteomics ProteoMM ProteomicsWorkflow

updated 9 months ago by mmvar • 0 • written 11 months ago by nkvnambiar • 0

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1.8k

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Proteomics DEP limma

written 2.9 years ago by barrypraveen • 0

15 results • Page 1 of 1

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Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Got you. Thanks again for your comments.

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

Thanks so much for your comment. Yes, this makes sense to me, especially since the effect of the drug is subtle. But it raises a larger con…

Answer: ERROR; return code from pthread_create() is 22 by James W. MacDonald 65k

Seems OK to me. ``` > dat <- ReadAffy() > dat AffyBatch object size of arrays=744x744 features (20 kb) cdf=HG-U219 (49386 affyids) …

Answer: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 65k

Unless you think the different lines or tissues will have very different within-group variances, you should just analyze together and make …

Answer: How to remove batch effect to combine RNAseq data from 2 different experiments? by James W. MacDonald 65k

It appears that batch is orthogonal to the treatment, so you can just fit a batch effect in your model.

Votes

Answer: DESeq2- Mysterious interaction suppresses DEGs

Answer: Subsetting RNAseq data | voomaByGroup()

biomaRt not working - lazy table error

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

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