Showing : qpcr • reset
0
votes
17
replies
2.7k
views
[Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
Sequencing RNASeq Microarray qPCR Coverage edgeR DESeq Sequencing RNASeq Microarray qPCR
updated 11.0 years ago by ★ 13k • written 11.0 years ago by ▴ 330
0
votes
12
replies
1.8k
views
htqPCR question
miRNA qPCR Normalization limma miRNA qPCR Normalization limma
updated 14.0 years ago by ★ 2.0k • written 14.0 years ago by ▴ 810
0
votes
9
replies
1.5k
views
htqPCR question
miRNA qPCR limma miRNA qPCR limma
updated 14.0 years ago by ▴ 810 • written 14.0 years ago by ★ 2.0k
1
vote
7
replies
1.6k
views
EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
edge qpcr qvalue
7.2 years ago • updated 6.3 years ago joe.d.moore.ii • 0
0
votes
6
replies
2.2k
views
HTqPCR
qPCR GO GLAD HTqPCR qPCR GO GLAD HTqPCR
updated 11.9 years ago by ★ 2.0k • written 11.9 years ago by ▴ 40
0
votes
6
replies
1.5k
views
HT qPCR - error in scale rank invariant
miRNA qPCR miRNA qPCR
updated 13.3 years ago by ★ 2.0k • written 13.3 years ago by ▴ 810
0
votes
5
replies
1.5k
views
dataset dim for siggenes
qPCR limma siggenes
updated 9.7 years ago by 65k • written 9.7 years ago by ▴ 100
0
votes
5
replies
1.7k
views
SCAN.UPC for Illumina arrays?
RNASeq qPCR affy oligo frma RNASeq qPCR affy oligo frma
updated 10.5 years ago by ▴ 590 • written 10.5 years ago by ★ 4.2k
0
votes
5
replies
1.7k
views
HTqPCR problem
qPCR qPCR
updated 11.9 years ago by ▴ 200 • written 11.9 years ago by ▴ 860
0
votes
4
replies
2.4k
views
HTqPCR to analyze Fluidigm 96.96 Dynamic Array data
qPCR HTqPCR qPCR HTqPCR
updated 13.9 years ago by ★ 2.0k • written 13.9 years ago by ▴ 30
0
votes
4
replies
1.5k
views
Reading in data with HTqPCR
qPCR Cancer cycle HTqPCR qPCR Cancer cycle HTqPCR
14.0 years ago • updated 13.9 years ago Heidi Dvinge ★ 2.0k
0
votes
4
replies
1.1k
views
HTqPCR only works for 384 qPCR plates
qPCR qPCR
updated 14.1 years ago by ★ 2.0k • written 14.1 years ago by ▴ 810
0
votes
4
replies
1.2k
views
HTqPCR questions
qPCR HTqPCR qPCR HTqPCR
updated 13.3 years ago by ▴ 330 • written 13.3 years ago by ★ 2.0k
0
votes
4
replies
1.0k
views
HTqPCR and factorial design
qPCR HTqPCR qPCR HTqPCR
updated 14.3 years ago by ★ 2.0k • written 14.3 years ago by ▴ 810
1
vote
4
replies
1.8k
views
ddCT Package for StepOnePlus qPCR output
qPCR ddCt geneexpression
updated 6.8 years ago by ▴ 120 • written 6.8 years ago by ▴ 60
0
votes
4
replies
1.4k
views
HTqPCR problems
qPCR GO Preprocessing GLAD HTqPCR qPCR GO Preprocessing GLAD HTqPCR
updated 11.8 years ago by ▴ 340 • written 11.9 years ago by ★ 2.0k
3
votes
4
replies
3.0k
views
Using limma for the analysis of qPCR data
NormqPCR EasyqpcR qPCR HTqPCR limma
updated 2.5 years ago by ▴ 380 • written 3.3 years ago by ▴ 660
0
votes
3
replies
1.1k
views
Manual creation of Affybatch object to study highthrouput qPCR experiments.
miRNA qPCR affy miRNA qPCR affy
updated 12.6 years ago by ▴ 300 • written 12.6 years ago by ★ 13k
0
votes
3
replies
993
views
HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 14.3 years ago by ★ 6.0k • written 14.3 years ago by ▴ 810
1
vote
3
replies
2.4k
views
ddCt calculation using bioconductor package
ddct qPCR
updated 2.9 years ago by ▴ 60 • written 9.1 years ago by ▴ 40
0
votes
3
replies
1.5k
views
RNASeq, differential expression between group, and large variance within groups
RNASeq qPCR edgeR DESeq RNASeq qPCR edgeR DESeq
updated 13.2 years ago by ★ 6.0k • written 13.2 years ago by 50k
0
votes
2
replies
951
views
how to 'bootstrap' expression data?
qPCR GO qPCR GO
updated 16.6 years ago by ★ 6.5k • written 16.6 years ago by ▴ 410
0
votes
2
replies
1.6k
views
creating a qPCRset from Fluidigm 96*96 arrays in HTqPCR
qPCR qPCR
updated 10.2 years ago by ▴ 150 • written 10.2 years ago by ▴ 50
0
votes
2
replies
2.2k
views
First time use of limma for two-color agilent array analysis
qPCR limma GeneSpring qPCR limma GeneSpring
updated 10.2 years ago by 65k • written 10.2 years ago by ▴ 30
0
votes
2
replies
1.5k
views
HTqPCR : readCtData problem?
miRNA qPCR HTqPCR miRNA qPCR HTqPCR
13.5 years ago Heidi Dvinge ★ 2.0k
0
votes
2
replies
1.3k
views
questions concerning quantile normalization in HTqPCR
miRNA qPCR miRNA qPCR
updated 13.6 years ago by ★ 2.0k • written 13.7 years ago by ▴ 810
0
votes
2
replies
2.0k
views
HTqPCR problem with creation of qPCRset
qPCR HTqPCR qPCR HTqPCR
updated 11.2 years ago by 65k • written 11.2 years ago by ▴ 20
0
votes
2
replies
1.9k
views
reading in data in ReadqPCR
qPCR Annotation HTqPCR qPCR Annotation HTqPCR
11.2 years ago Guest User ★ 13k
0
votes
2
replies
1.2k
views
Advise on setting up a non-specific filter for differential expression
qPCR qPCR
13.7 years ago Tobias Straub ▴ 430
0
votes
2
replies
2.2k
views
Fwd: help
qPCR qPCR
updated 11.7 years ago by ★ 2.0k • written 11.7 years ago by ▴ 30
0
votes
2
replies
1.0k
views
Advise on setting up a non-specific filter for differential expression
qPCR qPCR
13.7 years ago Lucia Peixoto ▴ 330
0
votes
2
replies
1.5k
views
log2FoldChange calculation in DESeq2
DESeq2 RNASeq qPCR qPCRData
2.7 years ago Claire • 0
0
votes
2
replies
748
views
Expression levels of individual affymetrix probes
qPCR probe qPCR probe
updated 16.5 years ago by 65k • written 16.5 years ago by ▴ 410
1
vote
2
replies
1.6k
views
qRT-PCR Sample Maximization software analysis and proper experimental design advice
qPCR Sample Maximization Analysis Experimental Design qRT-PCR
updated 9.0 years ago by 50k • written 9.0 years ago by ▴ 450
0
votes
2
replies
1.5k
views
Compatibility of Biorad cfx files to HTqPCR?
qPCR HTqPCR qPCR HTqPCR
updated 13.1 years ago by ★ 2.0k • written 13.1 years ago by ▴ 10
0
votes
2
replies
1.7k
views
Bacterial genomics
Sequencing Microarray qPCR genomes Sequencing Microarray qPCR genomes
updated 13.7 years ago by 16k • written 13.8 years ago by ▴ 30
0
votes
1
reply
1.2k
views
deseq2 for pair-wise analysis
qPCR qPCR
updated 9.7 years ago by 42k • written 9.7 years ago by ★ 13k
1
vote
1
reply
1.8k
views
Are the logFC confidence intervals returned by topTable adjusted for multiple comparisons?
Microarray qPCR limma
updated 9.6 years ago by 50k • written 9.7 years ago by ▴ 30
0
votes
1
reply
1.4k
views
Talk & Poster - Final Call - qPCR 2009 Event
SNP qPCR Normalization Visualization Regression Cancer probe PROcess microRNA SNP qPCR
15.4 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
1
reply
1.2k
views
R: Degradation plots - Affy package
Transcription qPCR Genetics probe affy Transcription qPCR Genetics probe affy
updated 17.7 years ago by ▴ 360 • written 17.7 years ago by ▴ 10
0
votes
1
reply
938
views
normalization usinf the delta Ct method
qPCR Normalization qPCR Normalization
updated 13.7 years ago by ★ 13k • written 13.7 years ago by ▴ 810
0
votes
1
reply
4.4k
views
EdgeR vs voom, what to consider when deciding which to use
RNASeq qPCR edgeR RNASeq qPCR edgeR
updated 11.1 years ago by ★ 13k • written 11.1 years ago by ▴ 330
0
votes
1
reply
1.3k
views
gcrma vs rma
Microarray qPCR probe ROC limma gcrma Microarray qPCR probe ROC limma gcrma
updated 13.7 years ago by ▴ 260 • written 13.7 years ago by ▴ 330
1
vote
1
reply
1.2k
views
qRT-PCR - reading tab-delimited file (biol & tech replicates)
qPCR ReadqPCR qPCR ReadqPCR
11.3 years ago boczniak767 ▴ 720
0
votes
1
reply
929
views
Normalization of array leads to decrease in number of differentially expressed genes
qPCR Normalization qPCR Normalization
updated 11.8 years ago by ▴ 430 • written 11.8 years ago by ▴ 290
0
votes
1
reply
883
views
HTqPCR Normalization
qPCR qPCR
updated 11.8 years ago by ▴ 300 • written 11.8 years ago by ▴ 10
0
votes
1
reply
2.2k
views
Bioconductor Digest, Vol 120, Issue 12
Microarray qPCR Coverage Annotation Pathways Visualization Cancer Breast Organism affy
11.2 years ago Matthew Thornton ▴ 350
0
votes
1
reply
803
views
clusterCt {HTqPCR}
qPCR qPCR
updated 12.2 years ago by ★ 2.0k • written 12.2 years ago by ▴ 290
0
votes
1
reply
1.1k
views
HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 14.3 years ago by ★ 6.0k • written 14.3 years ago by ▴ 810
0
votes
1
reply
997
views
HTqPCR
qPCR limma HTqPCR qPCR limma HTqPCR
12.0 years ago • updated 11.9 years ago Heidi Dvinge ★ 2.0k
50 results • Page 1 of 1
Recent ...
Replies
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Comment: Memory errors using read.bismark? by Juan Higareda • 0
Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…
Answer: meffil.snp.concordance by James W. MacDonald 65k
This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…
Answer: minfi latest update for EPIC V2 chip by James W. MacDonald 65k
Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…
Votes
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Awards • All
Popular Question to Gordon Smyth 50k
Popular Question to WouterDeCoster ▴ 130
Scholar to Michael Love 42k
Popular Question to Malcolm Cook ★ 1.6k
Popular Question to priyanka.m • 0
Locations • All
United States, just now
Norway, just now
United States, 2 minutes ago
United States, 21 minutes ago
Switzerland, 25 minutes ago
Traffic: 745 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6