Bioconductor Replicates

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2.4k

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conditions replicates SmallRNAData DESeq2

updated 22 months ago by Kevin Blighe ★ 4.0k • written 22 months ago by samer ▴ 10

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1.1k

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DESeq2 timecoursedata replicates

updated 2.7 years ago by Michael Love 43k • written 2.7 years ago by fepesanz8 • 0

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3.5k

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deseq2 R bioconductor RNA_Seq replicates

updated 5.9 years ago by swbarnes2 ★ 1.4k • written 5.9 years ago by aishu.jp ▴ 30

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2.7k

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rnaseq deseq2 differential expression batch effect replicates

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by Nik dAK ▴ 10

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3.8k

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deseq2 replicates error DESeqDataSetFromMatrix

updated 6.6 years ago by Michael Love 43k • written 6.6 years ago by Yonatan Amzaleg • 0

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3.9k

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limma proteomics replicates

updated 7.3 years ago by Aaron Lun ★ 29k • written 7.3 years ago by ivansilbern • 0

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3.2k

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limma duplicatecorrelation replicates

8.5 years ago rwalke13 • 0

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1.9k

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deseq2 replicates

updated 8.8 years ago by Michael Love 43k • written 8.8 years ago by le2336 ▴ 20

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5.9k

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DESEQ deseq2 deseq replicates biologicalreplicates

9.9 years ago wd ▴ 30

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1.6k

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rnbeads replicates

updated 10.0 years ago by rnbeads • 0 • written 10.0 years ago by Jon Manning ▴ 40

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1.1k

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replicates

10.2 years ago efratdahan21 • 0

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2.8k

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edgeR rna-seq replicates

updated 10.7 years ago by James W. MacDonald 68k • written 10.7 years ago by eb0906 • 0

12 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

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