Bioconductor Rforproteomics

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msnbase rforproteomics

5.2 years ago fgol ▴ 10

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RforProteomics MSnbase

updated 5.3 years ago by Laurent Gatto 1.6k • written 5.3 years ago by fgol ▴ 10

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RforProteomics Proteomics ProteomicsWorkflow

updated 9 months ago by Laurent Gatto 1.6k • written 9 months ago by mmvar • 0

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msnbase duplicate rforproteomics

updated 6.3 years ago by Laurent Gatto 1.6k • written 6.3 years ago by joris.vanhoutven ▴ 10

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prostar proteomics rforproteomics annotationforge

updated 5.9 years ago by Samuel Wieczorek ▴ 10 • written 5.9 years ago by lolli.langan ▴ 20

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DEP missing value imputation proteomics rforproteomics

6.4 years ago • updated 6.2 years ago alex.gos90 ▴ 10

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RforProteomics

3.5 years ago yueli7 ▴ 20

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RforProteomics

updated 4.5 years ago by James W. MacDonald 65k • written 4.5 years ago by jb3082 • 0

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Bioc package installation rforproteomics

updated 8.2 years ago by Laurent Gatto 1.6k • written 8.2 years ago by sarahgrogan • 0

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rforproteomics proteomics msnid msnbase

4.1 years ago daniel.magnus.bader ▴ 40

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error RforProteomics Install

updated 3.4 years ago by Mike Smith ★ 6.5k • written 3.4 years ago by Phoebe • 0

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Proteomics RforProteomics ProteomicsWorkflow Spectra MassSpectrometryData

updated 9 months ago by Laurent Gatto 1.6k • written 9 months ago by mmvar • 0

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Comment: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k

But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…

Comment: log2FoldChange value is way too different when compared with counts(dds) by HAK • 0

Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…

Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by ATpoint ★ 4.1k

Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…

Comment: Store output of matchPWM() by James W. MacDonald 65k

Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…

Comment: DEseq2 coefficient by JKim • 0

Hi Dr. Love, I'm sorry to ask another question to my old post. If the design isn't balanced, the interpretation of coefficients will be…

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SPIA plotP giving error

Answer: Fold change calculation in Diffbind vs. DESEQ2?

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Make custom Txdb class objects from Txdb

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