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rforproteomics
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6
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1.8k
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Protein quantification by MSnbase package
msnbase
rforproteomics
5.2 years ago
fgol
▴ 10
0
votes
5
replies
3.7k
views
Errors installing RforProteomics and MSnbase packages
RforProteomics
MSnbase
updated 5.3 years ago by
Laurent Gatto
1.6k • written 5.3 years ago by
fgol
▴ 10
0
votes
5
replies
738
views
R for Mass Spectrometry: PSMatch package won't read .mzid file exported from ProteinPilot?
RforProteomics
Proteomics
ProteomicsWorkflow
updated 9 months ago by
Laurent Gatto
1.6k • written 9 months ago by
mmvar
• 0
2
votes
4
replies
1.4k
views
calling combineFeatures twice causes duplicate row.names
msnbase
duplicate
rforproteomics
updated 6.3 years ago by
Laurent Gatto
1.6k • written 6.3 years ago by
joris.vanhoutven
▴ 10
1
vote
3
replies
1.4k
views
Running GO analysis via Prostar
prostar
proteomics
rforproteomics
annotationforge
updated 5.9 years ago by
Samuel Wieczorek
▴ 10 • written 5.9 years ago by
lolli.langan
▴ 20
3
votes
2
replies
1.5k
views
DEP: Grouping Samples for missing value imputation
DEP
missing value imputation
proteomics
rforproteomics
6.4 years ago • updated 6.2 years ago
alex.gos90
▴ 10
0
votes
2
replies
892
views
normalize the SILAC light heavy value
RforProteomics
3.5 years ago
yueli7
▴ 20
0
votes
1
reply
1.1k
views
Installation of package RforProteomics had non-zero exit status? ERROR lazy loading failed for package 'RforProteomics'
RforProteomics
updated 4.5 years ago by
James W. MacDonald
65k • written 4.5 years ago by
jb3082
• 0
0
votes
1
reply
1.5k
views
Errors installing RforProteomics
Bioc
package installation
rforproteomics
updated 8.2 years ago by
Laurent Gatto
1.6k • written 8.2 years ago by
sarahgrogan
• 0
2
votes
1
reply
950
views
Maximum parsimony protein assembly/inference
rforproteomics
proteomics
msnid
msnbase
4.1 years ago
daniel.magnus.bader
▴ 40
1
vote
1
reply
966
views
Errors in installing RforProteomics package
error
RforProteomics
Install
updated 3.4 years ago by
Mike Smith
★ 6.5k • written 3.4 years ago by
Phoebe
• 0
0
votes
1
reply
610
views
R for Mass Spectrometry: Precursor Scan Number lost when converting .wiff to .mzML?
Proteomics
RforProteomics
ProteomicsWorkflow
Spectra
MassSpectrometryData
updated 9 months ago by
Laurent Gatto
1.6k • written 9 months ago by
mmvar
• 0
12 results • Page
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Replies
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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