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rgraphviz
•
reset
0
votes
0
replies
191
views
Rgraphviz - exported (toFile) dot file loses colour and label information
Rgraphviz
4 months ago
sterlinggunn01
• 0
0
votes
2
replies
919
views
Rgraphviz installation: DLL problem?
Rgraphviz
Rgraphviz
written 14.2 years ago by
Gustavo Lacerda
▴ 10
1
vote
1
reply
1.7k
views
[SOLVED] Problem with the installation of Rgraphviz
Graphviz
Rgraphviz
2.3 years ago
c.bell.lu
• 0
0
votes
1
reply
592
views
Installation bugs in Rgraphviz
Rgraphviz
2.8 years ago
Ruoshi
• 0
1
vote
3
replies
1.4k
views
Installation of Rgraphviz fails - missing gvc.h
software error
Rgraphviz
updated 8 months ago by
Pranav
• 0 • written 4.0 years ago by
gvds
• 0
0
votes
1
reply
492
views
R studio abort using rgraphviz when using node labels
rgraphviz
updated 4.1 years ago by
James W. MacDonald
65k • written 4.1 years ago by
sterlinggunn01
• 0
2
votes
2
replies
1.3k
views
Rgraphviz installation failing
software error
Rgraphviz
updated 4.2 years ago by
Mike Smith
★ 6.5k • written 4.2 years ago by
mascaretti
• 0
2
votes
7
replies
1.5k
views
Error when installing Rgraphviz on Centos
Rgraphviz
Installation Error
4.6 years ago
jmh5ad
▴ 40
3
votes
4
replies
1.4k
views
Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3
Cytoscape
Rgraphviz
GOstats
4.9 years ago
Matthew Thornton
▴ 350
0
votes
4
replies
1.5k
views
Rgraphviz installation fails in R with OpenBLAS
Rgraphviz
5.5 years ago
Peter Langfelder
★ 3.0k
0
votes
16
replies
3.1k
views
Rgraphviz installation fails
rgraphviz
6.7 years ago
Giovanni Calice
▴ 160
0
votes
0
replies
1.1k
views
Subgraph attributes in Rgraphviz
rgraphviz
7.6 years ago
steve
• 0
0
votes
2
replies
1.4k
views
Pathview: Exporting non native KEGG pathway ignoring same.layer argument
Pathview
rgraphviz
graphviz
KEGG
updated 7.7 years ago by
Luo Weijun
★ 1.6k • written 7.7 years ago by
guillermo.marco
▴ 30
0
votes
0
replies
1.9k
views
Read Graphviz file .dot in R
r
rstudio
rgraphviz
graphviz
.dot
7.8 years ago
pleaseteachmehowtodoit
• 0
1
vote
1
reply
1.4k
views
Rgraphviz and margins
graph
Rgraphviz
graph
Rgraphviz
updated 8.3 years ago by
sebastian.wolf
• 0 • written 12.8 years ago by
Robert Stojnic
▴ 80
2
votes
4
replies
1.8k
views
Error installing Rgraphviz
installation
rgraphviz
updated 8.4 years ago by
James W. MacDonald
65k • written 8.4 years ago by
prochlorothrix
• 0
0
votes
1
reply
1.3k
views
GOstats and termGraph - Getting all of the plots out of the list
gostats
rgraphviz
updated 8.7 years ago by
Valerie Obenchain
★ 6.8k • written 8.7 years ago by
Matt Thornton
• 0
1
vote
2
replies
1.3k
views
Rgraphviz - issue with edge label when using multiple edges between two nodes
rgraphviz
updated 8.7 years ago by
Kasper Daniel Hansen
★ 6.5k • written 8.7 years ago by
ptaranti
• 0
0
votes
0
replies
1.2k
views
Rgraphviz: nodes with multiple colors
rgraphviz
graphviz
R
8.8 years ago
oliverfrings
• 0
0
votes
3
replies
1.6k
views
generating graph with different rown ames and column names
graph
rgraphviz
updated 9.4 years ago by
Hervé Pagès
16k • written 9.4 years ago by
tyrone.williams.701
• 0
3
votes
6
replies
3.2k
views
Rgraphviz installation problem
rgraphviz
Rgraphviz
9.6 years ago
Janet Young
▴ 740
0
votes
0
replies
1.3k
views
Rgraphviz compilation error
graph
Rgraphviz
PROcess
graph
Rgraphviz
PROcess
10.0 years ago
Kasper Daniel Hansen
★ 6.5k
0
votes
2
replies
1.6k
views
RGraphiz installation keeps on failing ubuntu 12.04 LTS server
Rgraphviz
Rgraphviz
updated 10.0 years ago by
Frederiek - Maarten Kerckhof
▴ 10 • written 10.0 years ago by
Guest User
★ 13k
2
votes
1
reply
1.7k
views
Rgraphviz install problem.HELP!!!!!
Rgraphviz
Rgraphviz
updated 10.0 years ago by
Kasper Hansen
▴ 30 • written 10.0 years ago by
Guest User
★ 13k
0
votes
12
replies
1.7k
views
Can't install Rgraphviz
Rgraphviz
Rgraphviz
updated 10.2 years ago by
Kasper Daniel Hansen
★ 6.5k • written 10.2 years ago by
enricoferrero
▴ 660
0
votes
5
replies
2.3k
views
Rgraphviz installation issue
Rgraphviz
gage
Rgraphviz
gage
updated 10.3 years ago by
Luo Weijun
★ 1.6k • written 10.3 years ago by
km
▴ 100
0
votes
1
reply
1.5k
views
Rgraphviz multiline edge label
graph
Rgraphviz
graph
Rgraphviz
updated 10.8 years ago by
Vincent J. Carey, Jr.
6.7k • written 10.8 years ago by
Guest User
★ 13k
0
votes
0
replies
1.4k
views
Error in clusterProfiler package with function \"setReadable<-\"
GO
Cancer
Rgraphviz
clusterProfiler
DOSE
GO
Cancer
Rgraphviz
clusterProfiler
DOSE
10.8 years ago
Martin Morgan
25k
0
votes
4
replies
1.8k
views
Problem in installing Rgraphviz
Rgraphviz
BiocInstaller
Rgraphviz
BiocInstaller
updated 10.9 years ago by
Steve Lianoglou
★ 13k • written 10.9 years ago by
Guest User
★ 13k
0
votes
0
replies
1.0k
views
looking for tools to study additive expression effects in gene pathways/networks
Pathways
Rgraphviz
KEGGgraph
Pathways
Rgraphviz
KEGGgraph
10.9 years ago
Christopher T Gregg
▴ 210
0
votes
5
replies
2.7k
views
problem with manipulating graphs created from dot files read by agread()
Rgraphviz
Rgraphviz
updated 11.3 years ago by
Paul Murrell
▴ 30 • written 11.3 years ago by
Alexis Dinno
▴ 20
0
votes
2
replies
1.6k
views
nodeRenderInfo fill property not working with graph/Rgraphviz
graph
Rgraphviz
graph
Rgraphviz
updated 11.4 years ago by
Kasper Daniel Hansen
★ 6.5k • written 11.4 years ago by
Cristobal Fresno Rodríguez
▴ 370
0
votes
1
reply
1.5k
views
Custom node sizes with nodeRenderInfo not work
Rgraphviz
Rgraphviz
updated 11.5 years ago by
florian.hahne@novartis.com
★ 1.6k • written 11.5 years ago by
heyi xiao
▴ 360
0
votes
10
replies
5.2k
views
Rgraphviz: how to read a \"dot\" file?
Rgraphviz
Rgraphviz
updated 11.5 years ago by
Sam Steingold
▴ 30 • written 11.5 years ago by
Guest User
★ 13k
0
votes
0
replies
1.1k
views
BioPAX parsing
Pathways
Network
Rgraphviz
rBiopaxParser
Pathways
Network
Rgraphviz
rBiopaxParser
11.6 years ago
Frank Kramer
▴ 10
0
votes
0
replies
943
views
Rgraphviz (news, testing)
Rgraphviz
Rgraphviz
11.6 years ago
Kasper Daniel Hansen
★ 6.5k
0
votes
1
reply
1.2k
views
Problem with Graphvix
Rgraphviz
Rgraphviz
updated 11.7 years ago by
Sean Davis
21k • written 11.7 years ago by
Guest User
★ 13k
0
votes
0
replies
827
views
How to distinguish two overlapped nodes
Rgraphviz
Rgraphviz
11.7 years ago
Guest User
★ 13k
0
votes
3
replies
2.2k
views
Library not loaded: /usr/local/lib/libgvc.5.dylib (Rgraphviz)
Rgraphviz
Rgraphviz
updated 11.8 years ago by
Dan Tenenbaum
★ 8.2k • written 11.8 years ago by
Peng Yu
▴ 940
0
votes
1
reply
892
views
Coordinate Question for Rgraphviz
Rgraphviz
Rgraphviz
updated 11.8 years ago by
Martin Morgan
25k • written 11.8 years ago by
Guest User
★ 13k
0
votes
3
replies
1.4k
views
topGO dependency: Rgrapphviz
GO
Rgraphviz
topGO
GO
Rgraphviz
topGO
updated 11.9 years ago by
Dan Tenenbaum
★ 8.2k • written 11.9 years ago by
Thompson, Kevin
▴ 20
0
votes
6
replies
2.2k
views
error installing Rgraphviz
Rgraphviz
PROcess
BiocInstaller
Rgraphviz
PROcess
BiocInstaller
updated 11.9 years ago by
Dan Tenenbaum
★ 8.2k • written 11.9 years ago by
Mark Miller
▴ 10
0
votes
1
reply
1.4k
views
Rgraphiz
Rgraphviz
Rgraphviz
updated 12.1 years ago by
Dan Tenenbaum
★ 8.2k • written 12.1 years ago by
zahra / زهرا ghayyomi / قیومی
▴ 10
0
votes
1
reply
1.0k
views
Microarray: correlation and Rgraphviz
affy
Rgraphviz
affy
Rgraphviz
updated 12.2 years ago by
Martin Morgan
25k • written 12.2 years ago by
CAM HABI
▴ 10
0
votes
4
replies
3.1k
views
Rgraphviz: fail to plot
Rgraphviz
Rgraphviz
updated 12.2 years ago by
Martin Morgan
25k • written 12.2 years ago by
Guest User
★ 13k
0
votes
1
reply
1.5k
views
Rgraphviz installing problem
Rgraphviz
GLAD
Rgraphviz
GLAD
updated 12.2 years ago by
Martin Morgan
25k • written 12.2 years ago by
Alexandra Federer
▴ 10
0
votes
0
replies
725
views
[R] Fwd: Rgraphviz installation problem
Rgraphviz
Rgraphviz
12.4 years ago
Guest User
★ 13k
0
votes
0
replies
1.1k
views
topGO graph visualization functions crashing under R 2.13.2 with Graphviz 2.20.3.1
GO
Visualization
graph
Rgraphviz
topGO
GO
Visualization
graph
Rgraphviz
topGO
12.5 years ago
Joseph Skaf
▴ 20
0
votes
5
replies
2.0k
views
installing Rgraphviz under CentOS 5.6
Rgraphviz
Rgraphviz
12.6 years ago
Ou, Jianhong
★ 1.3k
0
votes
2
replies
983
views
Rgraphviz Installation Issue
Rgraphviz
Rgraphviz
updated 12.6 years ago by
Kjell Konis
▴ 20 • written 12.6 years ago by
Jayanth Rajan
▴ 20
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Comment: Which input file is used for DGEList in EgdeR?
by
i.atanasoai
• 0
Understood, Thank you very much for the reply, very kind.
Comment: Which input file is used for DGEList in EgdeR?
by
Michael Love
41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Michael Love
41k
These genes are fine. They are just the ones where, by chance, the sample variance is below the sample mean. It happens. DESeq2 brings thes…
Comment: DEG with low counts
by
Michael Love
41k
These counts are too low, only a few samples above a count of 10. So for typical RNA-seq data that is underpowered to call differences. It…
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
If the counts are too low it in one group then you can't make the comparison either way (whether they are filtered out or just under-powere…
Votes
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
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