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Comment: Feature Counts - potential bug with outfile.jcounts
by
chris2.a.white
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Hi Gordon,
Thank you for pointing out that FeatureCounts detects junction reads de novo. It is not in the manual, and maybe could be.
Give…
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I've seen in some papers ~1 TPM for saying something in mouse/human etc. was "minimally expressed".
For an average length gene, 10 count…
Answer: Feature Counts - potential bug with outfile.jcounts
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The behavior that you have documented is expected and is explained in the featureCounts documentation.
The first thing to understand is th…
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No, featureCounts cannot change the XS tag to a different tag, because that would change the information in the output. featureCounts needs…
Comment: Margins for gene_set_enrichment_plot
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Thanks! This one might be worth remaking with `ComplexHeatmap`. Similar to https://github.com/LieberInstitute/spatialLIBD/pull/91 that was …
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