Bioconductor S4

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11k

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genomicranges grangeslist granges s4

updated 2.1 years ago by Hervé Pagès 16k • written 7.9 years ago by richierocks ▴ 40

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5.2k

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updated 9.1 years ago by Michael Lawrence ★ 11k • written 9.1 years ago by Koen Van den Berge ▴ 180

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2.7k

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lumi S4

9.2 years ago Chi Hong • 0

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1.8k

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rnbeads error as.vector(data) s4vectors s4

8.7 years ago schasse • 0

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1.3k

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mclust s4vectors S4 as.matrix .FCS

7.9 years ago anara92 • 0

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1.2k

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s4 coercion iranges integerlist

7.8 years ago jian_liangli • 0

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1.1k

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iranges integerlist s4

7.8 years ago Jurat Shahidin ▴ 80

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1.1k

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devtools S4 methods cache

5.5 years ago Michael Steinbaugh ▴ 90

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1.1k

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s4 methods SummarizedExperiment

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by brendan.innes ▴ 20

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1.0k

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DBI S4 Biobase

updated 21 months ago by Hervé Pagès 16k • written 21 months ago by sandmann.t ▴ 70

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1.0k

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s4 dataframe left_join merge

updated 5.1 years ago by Hervé Pagès 16k • written 5.1 years ago by Michael Steinbaugh ▴ 90

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1.0k

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S4 packages

updated 5.7 years ago by Michael Lawrence ★ 11k • written 5.7 years ago by lukaszbednarz ▴ 10

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999

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s4 generic

updated 5.3 years ago by Marcel Ramos 700 • written 5.3 years ago by Michael Steinbaugh ▴ 90

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861

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S4 Rcpp InteractionSet IRanges Rle

updated 3.9 years ago by Aaron Lun ★ 28k • written 3.9 years ago by lklei001 • 0

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802

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calcium imaging imaging s4

updated 4.1 years ago by shepherl 3.9k • written 4.1 years ago by muad.abdelhay ▴ 10

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733

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S4 deseq2

updated 5.3 years ago by swbarnes2 ★ 1.4k • written 5.3 years ago by shintzen • 0

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663

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class S4

updated 4.2 years ago by Hervé Pagès 16k • written 4.2 years ago by Teun van den Brand • 0

17 results • Page 1 of 1

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Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0

> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…

Comment: maSigPro genes from clusters by anne-laure • 0

Hello It is a litlle bit late but I do not get how to extract the genes from each cluster identified by see.genes(sigs$sig.genes$Day4vs…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

Your code seems ok. Does the vignette produce the same error? [link to STRINGdb R script vignette][1] [1]: https://www.bioconductor.or…

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Vincent J. Carey, Jr. 6.7k

Popular Question to Koen Van den Berge ▴ 180