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warning: example doesn't exist; while trying to build a package
bioconductor
package development
R
roxygen2
warning
6.5 years ago
clarisbaby
• 0
3
votes
3
replies
2.0k
views
Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chunk
rmarkdown
suppressWarning
warning
updated 14 months ago by
Mike Smith
★ 6.5k • written 2.4 years ago by
Wolfgang Huber
★ 13k
0
votes
9
replies
2.2k
views
R-devel - BiocGenerics - Warning: multiple methods tables found for which
BioGenerics
warning
3.9 years ago
ullrich
▴ 20
0
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1
reply
2.1k
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reading text file in R
warning
text
read.delim
updated 6.8 years ago by
Gordon Smyth
50k • written 6.8 years ago by
niutster
• 0
6
votes
3
replies
2.6k
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How to solve "WARNING: Add non-empty \value" with roxygen tags
bioccheck
roxygen2
warning
bioc-devel
package development
updated 6.5 years ago by
Lluís Revilla Sancho
▴ 730 • written 6.5 years ago by
Paul Brennan
▴ 10
2
votes
1
reply
1.2k
views
Warnings messages can not we handles/hidden
warning message
warning
R
rhdf5
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
matiasb
• 0
0
votes
3
replies
977
views
PureCN warning: test.num.copy outside recommended range
PureCN
Warning
updated 6.0 years ago by
markus.riester
▴ 130 • written 6.0 years ago by
twtoal
▴ 10
5
votes
4
replies
1.3k
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CMD check warning using Bioconductor as a source for the dependencies of an R package
Bioconductor
CMD check
warning
updated 5.2 years ago by
Martin Morgan
25k • written 5.2 years ago by
dong
▴ 10
2
votes
8
replies
2.4k
views
DelayedArray loading Warning causes stop in Bioconductor 3.12
DelayedArray
warning
installation
updated 3.9 years ago by
Hervé Pagès
16k • written 3.9 years ago by
inzirio
▴ 10
0
votes
1
reply
1.8k
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makeTxdbfromUCSC Warning message
MakeTXDCfromUCSC
GenomicFeatures
warning
updated 8.7 years ago by
Marc Carlson
★ 7.2k • written 8.7 years ago by
Lillyhchen
▴ 10
3
votes
2
replies
1.9k
views
DEXSeq throws a warning - rank-deficient matrix
dexseq
fit
matrix
warning
updated 2.5 years ago by
koushik
• 0 • written 7.2 years ago by
Assa Yeroslaviz
★ 1.5k
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Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
You seem to have the misunderstanding that you can change the design matrix but keep all the other code unchanged. The contrasts are comput…
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga
by
Michael Love
41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
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Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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