Showing : xps • reset
9
votes
7
replies
2.2k
views
[xps] Problems building scheme for DroGene 1.1 ST arrays in xps
xps
updated 7.2 years ago by ★ 3.9k • written 7.2 years ago by • 0
0
votes
8
replies
4.9k
views
error ReadAffy
Arabidopsis thaliana cdf affy gcrma PROcess oligo xps Arabidopsis thaliana cdf affy xps
updated 7.7 years ago by • 0 • written 11.9 years ago by ▴ 300
0
votes
3
replies
1.9k
views
Root installation for xps on cluster
xps root
updated 8.0 years ago by • 0 • written 9.7 years ago by ▴ 120
6
votes
8
replies
3.0k
views
Gene level analysis of Affymetrix GeneChip Mouse Exon Arrays
affy aroma.affymetrix exon array xps oligo
8.4 years ago Gordon Smyth 53k
0
votes
6
replies
2.2k
views
Xps configuration error on Ubuntu 16.04 despite root being installed
root xps TParallelCoord.h
updated 8.5 years ago by ★ 3.9k • written 8.5 years ago by ▴ 10
1
vote
2
replies
1.9k
views
[xps]Analysis of Affymetrix Clarion S array using xps package
xps
updated 8.8 years ago by ★ 3.9k • written 8.8 years ago by • 0
2
votes
5
replies
2.4k
views
[XPS]Installation of xps package in macOS Sierra
xps package installation
updated 8.8 years ago by 25k • written 8.8 years ago by • 0
0
votes
5
replies
2.3k
views
xps package - import.expr.scheme help
xps root R affy
updated 8.9 years ago by ★ 3.9k • written 8.9 years ago by • 0
2
votes
8
replies
3.1k
views
Cannot install xps package, Mac OS 10.11, R 3.3
xps installation
updated 9.0 years ago by ★ 3.9k • written 9.0 years ago by • 0
2
votes
3
replies
2.0k
views
MAS5 algorithm in mas5() function of xps function when process Human Gene 1.0 ST Array or Human Exon 1.0 ST Array
xps MAS5 algorithm Human Gene 1.0 ST Array Exon Array
9.3 years ago linweili_tj • 0
1
vote
34
replies
6.2k
views
how to check which probesets belong to which transcript?
xps affymetrix microarrays humangene2.0ST micro array data
updated 9.7 years ago by ★ 3.9k • written 9.7 years ago by ▴ 120
3
votes
7
replies
2.3k
views
To find Differential expressed exons using xps package
xps exons
updated 9.7 years ago by ★ 3.9k • written 9.7 years ago by ▴ 120
6
votes
25
replies
4.9k
views
How to import normalized file (using xps) to limma for differential expressed genes?
xps heatmap limma
updated 9.7 years ago by ★ 3.9k • written 9.7 years ago by ▴ 120
2
votes
11
replies
3.3k
views
RNA degradation plot interpretation
xps rnadegradationplot interpretation
updated 9.7 years ago by ★ 3.9k • written 9.8 years ago by ▴ 120
1
vote
5
replies
2.2k
views
Error: Number of PMs or MMs is zero (xps package)
rlm plm rnadegradationplot xps
updated 9.8 years ago by ★ 3.9k • written 9.8 years ago by ▴ 120
0
votes
4
replies
1.9k
views
error in import.exon.scheme, XPS package
xps import.exon.scheme error rnadegradationplot
9.8 years ago Biologist ▴ 120
0
votes
1
reply
1.4k
views
Error in creating scheme (xps package)
xps root scheme probeset
updated 9.8 years ago by ★ 3.9k • written 9.8 years ago by ▴ 120
0
votes
2
replies
9.2k
views
[SOLVED] BUG REPORT: Ubuntu 14.04 xps Installation libcrypto.so.10
xps ubuntu
updated 9.8 years ago by ★ 3.9k • written 9.8 years ago by ▴ 110
0
votes
1
reply
1.3k
views
Looking for a package allowing Affymetrix MoGene2.1ST processing
affy xps rma oligo
updated 10.0 years ago by ★ 4.1k • written 10.0 years ago by ▴ 10
0
votes
13
replies
3.9k
views
unable to load xps
xps
updated 10.3 years ago by ★ 3.9k • written 10.3 years ago by • 0
0
votes
5
replies
3.7k
views
Problem with xps package and root installation
xps root
updated 10.6 years ago by ★ 3.9k • written 10.6 years ago by • 0
4
votes
21
replies
4.9k
views
RMA normaliztion using XPS
normalization xps
updated 10.6 years ago by ★ 3.9k • written 10.7 years ago by • 0
0
votes
1
reply
1.7k
views
install xps in ubuntu 14.04
xps microarray installation
updated 10.7 years ago by ★ 3.9k • written 10.7 years ago by • 0
1
vote
3
replies
2.2k
views
Problem installing XPS
xps r
updated 10.7 years ago by ★ 3.9k • written 10.7 years ago by • 0
1
vote
2
replies
2.5k
views
Installation of "xps" on windows 7 : error message
xps windows 7 Install
updated 11.2 years ago by ★ 3.9k • written 11.2 years ago by • 0
2
votes
2
replies
3.6k
views
HuGene 2.0 ST CDF files and xps
xps hugene20
updated 11.2 years ago by ★ 3.9k • written 11.2 years ago by ▴ 60
0
votes
1
reply
1.2k
views
XPS differential expression
xps xps
updated 11.4 years ago by ★ 3.9k • written 11.4 years ago by ▴ 30
0
votes
2
replies
1.6k
views
xps - error in normalize - "Error: Length of non-varying units is zero."
Normalization PROcess xps Normalization PROcess xps
updated 11.4 years ago by ★ 3.9k • written 11.4 years ago by ▴ 390
0
votes
10
replies
3.4k
views
Unable to load XPS package in R studio
xps xps
updated 11.4 years ago by ★ 3.9k • written 11.4 years ago by ▴ 80
0
votes
4
replies
2.1k
views
error with makecdfenv package
Annotation cdf makecdfenv oligo xps Annotation cdf makecdfenv oligo xps
updated 11.4 years ago by ★ 3.9k • written 11.4 years ago by 68k
0
votes
3
replies
2.2k
views
XPS with Arabidopsis Gene 1.1 ST Array Strip
xps xps
updated 11.4 years ago by ★ 3.9k • written 11.4 years ago by ★ 13k
0
votes
3
replies
1.9k
views
External RNA controls on Rat Gene ST 2.0 chip lfc ~ 1 after xps rma??
Normalization xps Normalization xps
updated 11.5 years ago by ▴ 350 • written 11.5 years ago by ▴ 390
0
votes
3
replies
1.6k
views
Unable to load 'xps' library
xps xps
updated 11.6 years ago by ★ 3.9k • written 11.6 years ago by ▴ 20
0
votes
1
reply
1.6k
views
VSN after xps with RaGene2.0ST chips - is there a way to keep an identifier?
vsn PROcess xps vsn PROcess xps
updated 11.8 years ago by ★ 13k • written 11.8 years ago by ▴ 390
0
votes
9
replies
3.0k
views
using frma and brainarray cdf on exon arrays
cdf affy PROcess oligo xps frma cdf affy PROcess oligo xps frma
updated 11.9 years ago by ▴ 600 • written 11.9 years ago by ▴ 100
0
votes
1
reply
2.6k
views
Importing RMA processed data into limma for eBayes
Microarray Normalization affy vsn limma PROcess xps Microarray Normalization affy vsn
12.0 years ago Matthew Thornton ▴ 390
0
votes
1
reply
1.2k
views
Unable to load xps...
xps xps
updated 12.1 years ago by ★ 3.9k • written 12.1 years ago by ▴ 150
0
votes
1
reply
3.1k
views
Analysis of Human Gene 1.1 ST Array
Microarray cdf affy PROcess oligo xps Microarray cdf affy PROcess oligo xps
updated 12.1 years ago by 68k • written 12.1 years ago by ▴ 190
0
votes
2
replies
1.9k
views
Unable to load xps...
xps xps
updated 12.1 years ago by ★ 3.9k • written 12.1 years ago by ▴ 150
0
votes
1
reply
1.6k
views
upload multiple genelists at a time for GO or pathway enrichment
GO cdf oligo pdInfoBuilder xps GO cdf oligo pdInfoBuilder xps
updated 12.1 years ago by ▴ 190 • written 12.1 years ago by ▴ 100
0
votes
0
replies
2.9k
views
Importing quantile normalized .txt file to limma for differential expression
Normalization affy limma oligo xps Normalization affy limma oligo xps
12.2 years ago James W. MacDonald 68k
0
votes
3
replies
1.6k
views
xps library with mouse gene 1.0 transcript arrays
Annotation cdf xps Annotation cdf xps
updated 12.2 years ago by ★ 3.9k • written 12.2 years ago by ★ 1.5k
0
votes
8
replies
2.5k
views
Unable to load xps
xps xps
updated 12.3 years ago by ★ 3.9k • written 12.3 years ago by ★ 13k
0
votes
1
reply
1.6k
views
XPS package QC data
affy arrayQualityMetrics xps affy arrayQualityMetrics xps
12.3 years ago cstrato ★ 3.9k
0
votes
3
replies
1.8k
views
XPS package QC data
affy arrayQualityMetrics xps affy arrayQualityMetrics xps
updated 12.3 years ago by ★ 3.9k • written 12.3 years ago by ▴ 40
0
votes
3
replies
1.7k
views
xps- not being able to load
xps xps
updated 12.4 years ago by ★ 3.9k • written 12.4 years ago by ▴ 20
0
votes
1
reply
3.8k
views
Error to import Data Affymetrix
affy oligo xps affy oligo xps
updated 12.5 years ago by ★ 13k • written 12.5 years ago by ★ 13k
0
votes
0
replies
1.3k
views
faillure in ragene10stv1 in rat Gene St0.1 Affymetrix data
Annotation affy oligo xps Annotation affy oligo xps
12.7 years ago James W. MacDonald 68k
0
votes
1
reply
1.6k
views
xps- not being able to load it
xps xps
updated 12.7 years ago by ★ 3.9k • written 12.7 years ago by ▴ 810
0
votes
9
replies
2.7k
views
xps- not being able to load it
xps xps
updated 12.7 years ago by ★ 3.9k • written 12.7 years ago by ▴ 810
150 results • Page 1 of 3
Recent ...
Replies
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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