Showing : zebrafish • reset
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1.9k
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Mapping microarray probes to the genome using findOverlaps
Microarray Alignment Annotation zebrafish probe Biostrings GenomicFeatures Microarray
updated 13.2 years ago by 21k • written 13.2 years ago by 16k
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6
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updated 14.2 years ago by 65k • written 14.2 years ago by ★ 1.5k
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Agilent zebrafish4x44 database
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updated 14.5 years ago by ★ 1.3k • written 14.5 years ago by ▴ 460
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4
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Error in AnnBuilder writeAnnData2Pkg
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updated 19.0 years ago by ★ 2.9k • written 19.0 years ago by ▴ 510
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3
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1.1k
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chromosome plot
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updated 16.9 years ago by ★ 7.4k • written 16.9 years ago by ▴ 160
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3
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1.6k
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Mapping microarray probes to the genome using findOverlaps
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updated 13.2 years ago by 21k • written 13.2 years ago by ▴ 140
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Need help annotating Affymetrix 1.1ST microarrays
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updated 7.6 years ago by ★ 3.9k • written 7.6 years ago by ▴ 70
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TxDb file for Drerio (ie zebrafish)
Organism zebrafish CRISPRseek Organism zebrafish CRISPRseek
updated 10.2 years ago by 65k • written 10.2 years ago by ▴ 10
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blast probe clusters when using Affymetrix Gene Array Strips
zebrafish zebrafish
updated 10.6 years ago by 65k • written 10.6 years ago by ▴ 80
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2
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1.1k
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Interspecies differential expression of orthologs with Edger
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updated 9.6 years ago by 50k • written 9.7 years ago by ▴ 140
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2
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1.8k
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Help with Gviz \"IdeogramTrack\" and \"BioMartGeneTrackRegion\" commands
zebrafish biomaRt zebrafish biomaRt
updated 11.3 years ago by ★ 1.6k • written 11.3 years ago by ★ 13k
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2
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Help with loading newly created custom annotation db into R session
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updated 15.3 years ago by 65k • written 15.3 years ago by ▴ 300
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988
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simpleaffy QCstats and affyQAReport repost
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updated 16.7 years ago by ★ 1.1k • written 16.7 years ago by ▴ 70
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zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
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updated 18.8 years ago by ▴ 780 • written 18.8 years ago by ★ 1.4k
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2
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agilent zebrafish array annotation
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16.0 years ago Georg Otto ▴ 510
1
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1
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1.8k
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Mapping Affymetrix annotations with Bioconductor annotations
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updated 10.6 years ago by 65k • written 10.6 years ago by ▴ 80
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1
reply
952
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Invalid "marrayInfo" object
zebrafish zebrafish
updated 20.8 years ago by ▴ 920 • written 20.8 years ago by ▴ 230
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1
reply
732
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affymetrix zebrafish chip
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updated 19.8 years ago by 65k • written 19.8 years ago by ▴ 140
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votes
1
reply
760
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problems using cdfenv
zebrafish cdf makecdfenv simpleaffy zebrafish cdf makecdfenv simpleaffy
updated 19.6 years ago by 65k • written 19.6 years ago by ▴ 510
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1
reply
1.2k
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zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 18.8 years ago by ★ 1.4k • written 18.8 years ago by ★ 1.1k
0
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1
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1.2k
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biomaRt gives only NA output
drosgenome1 zebrafish biomaRt drosgenome1 zebrafish biomaRt
updated 18.6 years ago by ▴ 420 • written 18.6 years ago by ▴ 150
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1
reply
796
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zebrafish annotation
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updated 15.6 years ago by ★ 7.2k • written 15.6 years ago by ▴ 60
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Group-wise gcrma normalization
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updated 15.2 years ago by ★ 6.5k • written 15.2 years ago by ▴ 30
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1
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833
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siggenes: sam2html + affymetrix zebrafish
zebrafish zebrafish
14.9 years ago Bio Sam ▴ 60
0
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1
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717
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GOstats testing using EntrezGene IDs not in chip-specific annotation package?
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updated 14.2 years ago by ★ 2.0k • written 14.2 years ago by ★ 2.0k
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1
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948
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GOstats - zebrafish
Annotation GO zebrafish probe Annotation GO zebrafish probe
updated 14.0 years ago by 65k • written 14.0 years ago by ▴ 460
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1
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1.1k
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Annotation in Agi4x44PreProcess
Annotation zebrafish probe Agi4x44PreProcess Annotation zebrafish probe Agi4x44PreProcess
updated 13.8 years ago by ★ 7.2k • written 13.8 years ago by ▴ 40
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1
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1.1k
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Agi4x44PreProcess: Replicated Genes and Custom Annotation Database
Annotation zebrafish probe DECIPHER Annotation zebrafish probe DECIPHER
updated 13.7 years ago by ★ 7.2k • written 13.7 years ago by ▴ 40
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1
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Useful information about Ensembl release 67 mart databases
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11.9 years ago Thomas Maurel ▴ 800
1
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1
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2.9k
views
goseq/nullp with non-native identifiers
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updated 11.6 years ago by ▴ 100 • written 11.7 years ago by ▴ 140
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1.0k
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affymtrix transcript_cluster categories
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updated 10.6 years ago by 65k • written 10.6 years ago by ▴ 80
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1.3k
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ChIPpeakAnno, getAnnotation question
Annotation GO zebrafish convert biomaRt ChIPpeakAnno Annotation GO zebrafish convert
updated 10.6 years ago by ★ 4.3k • written 10.6 years ago by ★ 13k
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votes
1
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1.3k
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ChIPpeakAnno, getAnnotation question
Annotation zebrafish convert biomaRt ChIPpeakAnno Annotation zebrafish convert biomaRt
updated 10.6 years ago by ★ 4.3k • written 10.6 years ago by ▴ 10
9
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News: Ensembl release 80 is out!
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updated 8.9 years ago by ▴ 390 • written 8.9 years ago by ▴ 800
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1
reply
1.3k
views
Importing and Extracting Annotation
annotation zebrafish probe
updated 8.0 years ago by 65k • written 8.1 years ago by • 0
0
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0
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832
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homologs for xenopus laevis
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16.6 years ago Mayte Suarez-Farinas ▴ 510
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Agi4x44PreProcess
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13.6 years ago Neel Aluru ▴ 460
0
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0
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biomaRt zebrafish
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18.7 years ago Georg Otto ▴ 510
0
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0
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agilent zebrafish array annotation package
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18.3 years ago Georg Otto ▴ 510
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0
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Help with Gviz \"IdeogramTrack\" and \"BioMartGeneTrackRegion\" commands
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11.2 years ago florian.hahne@novartis.com ★ 1.6k
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1.5k
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Useful information about Ensembl release 71 mart databases
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11.0 years ago Thomas Maurel ▴ 800
0
votes
0
replies
807
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Bsgenome Zv7 sequence data
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14.7 years ago Hervé Pagès 16k
0
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0
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946
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problem using annotation database with annaffy
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14.9 years ago Georg Otto ▴ 510
0
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0
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biomaRt zebrafish
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18.7 years ago Steffen Durinck ▴ 420
0
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0
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Ensembl mart release 54: Useful information
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15.0 years ago Rhoda Kinsella ▴ 660
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Ensembl mart release 57: Useful information
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14.1 years ago Rhoda Kinsella ▴ 660
0
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Useful information about Ensembl release 76 mart databases
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9.7 years ago Thomas Maurel ▴ 800
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AgiMicroRna - FilterMicroRna and SignificantMicroRna function
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13.9 years ago Neel Aluru ▴ 460
0
votes
0
replies
822
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QC questions
zebrafish cdf makecdfenv simpleaffy zebrafish cdf makecdfenv simpleaffy
19.5 years ago Crispin Miller ★ 1.1k
0
votes
0
replies
885
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Re: lm.series, design matrix
zebrafish limma zebrafish limma
20.8 years ago James Wettenhall ▴ 1000
50 results • Page 1 of 1
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Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…
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Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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