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Comment: Comment: Trouble importing my own Gene Ontology Annotation into topGO
2.8 years ago Raito92 ▴ 60
1
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3
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2.8k
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Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 2.8 years ago by 68k • written 2.8 years ago by ▴ 60
0
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0
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3.8k
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Create a Gene Enrichment GO plot from goana output
goana RNASeq edgeR RnaSeq GO
3.0 years ago Raito92 ▴ 60
0
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1
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4.5k
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Comment: Comment: Is goana function for Gene Ontology enrichement analysis suitable for both edgeR
3.0 years ago Raito92 ▴ 60
0
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0
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4.5k
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Comment: Comment: Is goana function for Gene Ontology enrichement analysis suitable for both edgeR
3.0 years ago Raito92 ▴ 60
15
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18
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4.5k
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Is goana function for Gene Ontology enrichement analysis suitable for both edgeR and DESeq2 DEGs lists?
DESeq2 edgeR goana GO
updated 3.0 years ago by 52k • written 3.0 years ago by ▴ 60
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4.5k
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Comment: Comment: Is goana function for Gene Ontology enrichement analysis suitable for both edgeR
3.0 years ago Raito92 ▴ 60
0
votes
1
reply
4.5k
views
Comment: Comment: Is goana function for Gene Ontology enrichement analysis suitable for both edgeR
3.0 years ago Raito92 ▴ 60
0
votes
0
replies
4.5k
views
Comment: Comment: Is goana function for Gene Ontology enrichement analysis suitable for both edgeR
3.0 years ago Raito92 ▴ 60
0
votes
1
reply
4.5k
views
Comment: Comment: Is goana function for Gene Ontology enrichement analysis suitable for both edgeR
3.0 years ago Raito92 ▴ 60
0
votes
1
reply
4.5k
views
Comment: Comment: Is goana function for Gene Ontology enrichement analysis suitable for both edgeR
3.0 years ago Raito92 ▴ 60
0
votes
0
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1.8k
views
Comment: Comment: Make samples symbols bigger in PCA / MDS analysis with plotMDS function
3.0 years ago Raito92 ▴ 60
2
votes
2
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1.8k
views
Make samples symbols bigger in PCA / MDS analysis with plotMDS function
plotMDS PCA RNASeq MDS
updated 3.0 years ago by 52k • written 3.0 years ago by ▴ 60
0
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0
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4.8k
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Comment: Comment: Performing simple pairwise comparisons in DESEQ2
3.1 years ago Raito92 ▴ 60
0
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1
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4.8k
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Comment: Comment: Performing simple pairwise comparisons in DESEQ2
3.1 years ago Raito92 ▴ 60
0
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0
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1.1k
views
Comment: Comment: Extend comparisons between two groups to more groups in DESEQ2
3.1 years ago Raito92 ▴ 60
0
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2
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1.1k
views
Extend comparisons between two groups to more groups in DESEQ2
edgeR DEGs DESEQ2 RNASeqData
3.1 years ago Raito92 ▴ 60
0
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1
reply
4.8k
views
Comment: Comment: Performing simple pairwise comparisons in DESEQ2
3.2 years ago Raito92 ▴ 60
0
votes
6
replies
4.8k
views
Performing simple pairwise comparisons in DESEQ2
edgeR DEG RNASeq DESEQ2
updated 3.1 years ago by 43k • written 3.2 years ago by ▴ 60
0
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1
reply
488
views
RNA Targeted Ampliseq Data analysis - What approach to prefer?
ampliseq rna targeted edger deseq2
updated 4.8 years ago by 43k • written 4.8 years ago by ▴ 60
0
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0
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2.0k
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Comment: C: DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
4.9 years ago Raito92 ▴ 60
1
vote
2
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2.0k
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DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
dexseq python gtf gff3 annotation
4.9 years ago Raito92 ▴ 60
0
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1
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3.9k
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Comment: C: Heatmap only including DE genes?
4.9 years ago Raito92 ▴ 60
0
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0
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3.9k
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Comment: C: Heatmap only including DE genes?
4.9 years ago Raito92 ▴ 60
0
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1
reply
3.9k
views
Comment: C: Heatmap only including DE genes?
4.9 years ago Raito92 ▴ 60
0
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0
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3.0k
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Comment: C: Alternative tools to perform GO enrichment on DE genes
4.9 years ago Raito92 ▴ 60
0
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0
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3.0k
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Comment: C: Alternative tools to perform GO enrichment on DE genes
4.9 years ago Raito92 ▴ 60
0
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0
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2.7k
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Comment: C: GO enrichment analysis with goana after performing DE analysis with glmTreat
4.9 years ago Raito92 ▴ 60
0
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1
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2.7k
views
Comment: C: GO enrichment analysis with goana after performing DE analysis with glmTreat
updated 5.0 years ago by 52k • written 5.0 years ago by ▴ 60
0
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0
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2.7k
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Comment: C: GO enrichment analysis with goana after performing DE analysis with glmTreat
5.0 years ago Raito92 ▴ 60
0
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1
reply
1.9k
views
Comment: C: Different numbers of DE genes using edgeR and DESEQ2
5.0 years ago Raito92 ▴ 60
0
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0
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1.9k
views
Comment: C: Different numbers of DE genes using edgeR and DESEQ2
5.0 years ago Raito92 ▴ 60
0
votes
0
replies
3.9k
views
Comment: C: Heatmap only including DE genes?
5.0 years ago Raito92 ▴ 60
0
votes
1
reply
3.9k
views
Comment: C: Heatmap only including DE genes?
5.0 years ago Raito92 ▴ 60
0
votes
2
replies
3.0k
views
Comment: C: Alternative tools to perform GO enrichment on DE genes
updated 5.0 years ago by 52k • written 5.0 years ago by ▴ 60
5
votes
7
replies
3.0k
views
Alternative tools to perform GO enrichment on DE genes
go de enrichment rnaseq goana
updated 5.0 years ago by 52k • written 5.0 years ago by ▴ 60
5
votes
11
replies
3.9k
views
Heatmap only including DE genes?
heatmap coolmap pheatmap
updated 5.0 years ago by 52k • written 5.0 years ago by ▴ 60
3
votes
5
replies
1.9k
views
Different numbers of DE genes using edgeR and DESEQ2
edger deseq2 rnaseq de
updated 5.0 years ago by 52k • written 5.0 years ago by ▴ 60
6
votes
6
replies
2.7k
views
GO enrichment analysis with goana after performing DE analysis with glmTreat
go DE edger rnaseq glmTreat
updated 5.0 years ago by 52k • written 5.0 years ago by ▴ 60
0
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1
reply
2.6k
views
GO enrichment analysis graphs after goseq: any easy solutions?
go enrichment gene ontology goseq go
5.5 years ago Raito92 ▴ 60
0
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0
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1.5k
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Comment: C: Can't install GOSEQ (dependency problem) on CentOS 7!
5.5 years ago Raito92 ▴ 60
2
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6
replies
1.5k
views
Can't install GOSEQ (dependency problem) on CentOS 7!
goseq r package r
updated 5.5 years ago by ★ 6.6k • written 5.5 years ago by ▴ 60
1
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0
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2.6k
views
Comment: C: topGO package unable to find library(ALL) and data(ALL)
5.8 years ago Raito92 ▴ 60
2
votes
3
replies
1.9k
views
Boxplot function not showing all reads length on x-axis
boxplot reads fastq sequencing rsubread
updated 5.8 years ago by ★ 3.6k • written 5.8 years ago by ▴ 60
2
votes
2
replies
2.6k
views
topGO package unable to find library(ALL) and data(ALL)
topGO software error
updated 5.8 years ago by 68k • written 5.8 years ago by ▴ 60
0
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0
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1.9k
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Comment: C: Boxplot function not showing all reads length on x-axis
5.8 years ago Raito92 ▴ 60
0
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0
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2.2k
views
Comment: C: Function kegga not working for species other than the conventional ones - Pathwa
5.9 years ago Raito92 ▴ 60
0
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0
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2.2k
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Comment: C: Function kegga not working for species other than the conventional ones - Pathwa
5.9 years ago Raito92 ▴ 60
5
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4
replies
2.2k
views
Function kegga not working for species other than the conventional ones - Pathways do not overlap with universe
kegga limma pathway analysis kegg
updated 5.9 years ago by 52k • written 5.9 years ago by ▴ 60
0
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0
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1.9k
views
Comment: C: Improving the performance of the align function from Rsubread for old Roche454 r
5.9 years ago Raito92 ▴ 60
64 results • Page 1 of 2
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