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Comment: Comment: Trouble importing my own Gene Ontology Annotation into topGO
3.4 years ago Raito92 ▴ 60
1
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3
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3.2k
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Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 3.4 years ago by 68k • written 3.4 years ago by ▴ 60
0
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0
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4.2k
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Create a Gene Enrichment GO plot from goana output
goana RNASeq edgeR RnaSeq GO
3.6 years ago Raito92 ▴ 60
0
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1
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5.1k
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Comment: Comment: Is goana function for Gene Ontology enrichement analysis suitable for both edgeR
3.6 years ago Raito92 ▴ 60
0
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0
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5.1k
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Comment: Comment: Is goana function for Gene Ontology enrichement analysis suitable for both edgeR
3.6 years ago Raito92 ▴ 60
15
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18
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5.1k
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Is goana function for Gene Ontology enrichement analysis suitable for both edgeR and DESeq2 DEGs lists?
DESeq2 edgeR goana GO
updated 3.6 years ago by 53k • written 3.6 years ago by ▴ 60
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5.1k
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Comment: Comment: Is goana function for Gene Ontology enrichement analysis suitable for both edgeR
3.6 years ago Raito92 ▴ 60
0
votes
1
reply
5.1k
views
Comment: Comment: Is goana function for Gene Ontology enrichement analysis suitable for both edgeR
3.6 years ago Raito92 ▴ 60
0
votes
0
replies
5.1k
views
Comment: Comment: Is goana function for Gene Ontology enrichement analysis suitable for both edgeR
3.6 years ago Raito92 ▴ 60
0
votes
1
reply
5.1k
views
Comment: Comment: Is goana function for Gene Ontology enrichement analysis suitable for both edgeR
3.6 years ago Raito92 ▴ 60
0
votes
1
reply
5.1k
views
Comment: Comment: Is goana function for Gene Ontology enrichement analysis suitable for both edgeR
3.6 years ago Raito92 ▴ 60
0
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0
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2.0k
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Comment: Comment: Make samples symbols bigger in PCA / MDS analysis with plotMDS function
3.6 years ago Raito92 ▴ 60
2
votes
2
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2.0k
views
Make samples symbols bigger in PCA / MDS analysis with plotMDS function
plotMDS PCA RNASeq MDS
updated 3.6 years ago by 53k • written 3.6 years ago by ▴ 60
0
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0
replies
5.3k
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Comment: Comment: Performing simple pairwise comparisons in DESEQ2
3.8 years ago Raito92 ▴ 60
0
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1
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5.3k
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Comment: Comment: Performing simple pairwise comparisons in DESEQ2
3.8 years ago Raito92 ▴ 60
0
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0
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1.2k
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Comment: Comment: Extend comparisons between two groups to more groups in DESEQ2
3.8 years ago Raito92 ▴ 60
0
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2
replies
1.2k
views
Extend comparisons between two groups to more groups in DESEQ2
edgeR DEGs DESEQ2 RNASeqData
3.8 years ago Raito92 ▴ 60
0
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1
reply
5.3k
views
Comment: Comment: Performing simple pairwise comparisons in DESEQ2
3.8 years ago Raito92 ▴ 60
0
votes
6
replies
5.3k
views
Performing simple pairwise comparisons in DESEQ2
edgeR DEG RNASeq DESEQ2
updated 3.8 years ago by 43k • written 3.8 years ago by ▴ 60
0
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1
reply
565
views
RNA Targeted Ampliseq Data analysis - What approach to prefer?
ampliseq rna targeted edger deseq2
updated 5.4 years ago by 43k • written 5.4 years ago by ▴ 60
0
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0
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2.2k
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Comment: C: DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
5.5 years ago Raito92 ▴ 60
1
vote
2
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2.2k
views
DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
dexseq python gtf gff3 annotation
5.5 years ago Raito92 ▴ 60
0
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1
reply
4.4k
views
Comment: C: Heatmap only including DE genes?
5.6 years ago Raito92 ▴ 60
0
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0
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4.4k
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Comment: C: Heatmap only including DE genes?
5.6 years ago Raito92 ▴ 60
0
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1
reply
4.4k
views
Comment: C: Heatmap only including DE genes?
5.6 years ago Raito92 ▴ 60
0
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0
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3.6k
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Comment: C: Alternative tools to perform GO enrichment on DE genes
5.6 years ago Raito92 ▴ 60
0
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0
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3.6k
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Comment: C: Alternative tools to perform GO enrichment on DE genes
5.6 years ago Raito92 ▴ 60
0
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0
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3.1k
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Comment: C: GO enrichment analysis with goana after performing DE analysis with glmTreat
5.6 years ago Raito92 ▴ 60
0
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1
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3.1k
views
Comment: C: GO enrichment analysis with goana after performing DE analysis with glmTreat
updated 5.6 years ago by 53k • written 5.6 years ago by ▴ 60
0
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0
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3.1k
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Comment: C: GO enrichment analysis with goana after performing DE analysis with glmTreat
5.6 years ago Raito92 ▴ 60
0
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1
reply
2.2k
views
Comment: C: Different numbers of DE genes using edgeR and DESEQ2
5.6 years ago Raito92 ▴ 60
0
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0
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2.2k
views
Comment: C: Different numbers of DE genes using edgeR and DESEQ2
5.6 years ago Raito92 ▴ 60
0
votes
0
replies
4.4k
views
Comment: C: Heatmap only including DE genes?
5.6 years ago Raito92 ▴ 60
0
votes
1
reply
4.4k
views
Comment: C: Heatmap only including DE genes?
5.6 years ago Raito92 ▴ 60
0
votes
2
replies
3.6k
views
Comment: C: Alternative tools to perform GO enrichment on DE genes
updated 5.6 years ago by 53k • written 5.6 years ago by ▴ 60
5
votes
7
replies
3.6k
views
Alternative tools to perform GO enrichment on DE genes
go de enrichment rnaseq goana
updated 5.6 years ago by 53k • written 5.6 years ago by ▴ 60
5
votes
11
replies
4.4k
views
Heatmap only including DE genes?
heatmap coolmap pheatmap
updated 5.6 years ago by 53k • written 5.6 years ago by ▴ 60
3
votes
5
replies
2.2k
views
Different numbers of DE genes using edgeR and DESEQ2
edger deseq2 rnaseq de
updated 5.6 years ago by 53k • written 5.6 years ago by ▴ 60
6
votes
6
replies
3.1k
views
GO enrichment analysis with goana after performing DE analysis with glmTreat
go DE edger rnaseq glmTreat
updated 5.6 years ago by 53k • written 5.6 years ago by ▴ 60
0
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1
reply
2.8k
views
GO enrichment analysis graphs after goseq: any easy solutions?
go enrichment gene ontology goseq go
6.1 years ago Raito92 ▴ 60
0
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0
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1.7k
views
Comment: C: Can't install GOSEQ (dependency problem) on CentOS 7!
6.1 years ago Raito92 ▴ 60
2
votes
6
replies
1.7k
views
Can't install GOSEQ (dependency problem) on CentOS 7!
goseq r package r
updated 6.1 years ago by ★ 6.6k • written 6.1 years ago by ▴ 60
1
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0
replies
2.9k
views
Comment: C: topGO package unable to find library(ALL) and data(ALL)
6.4 years ago Raito92 ▴ 60
2
votes
3
replies
2.2k
views
Boxplot function not showing all reads length on x-axis
boxplot reads fastq sequencing rsubread
updated 6.4 years ago by ★ 3.6k • written 6.4 years ago by ▴ 60
2
votes
2
replies
2.9k
views
topGO package unable to find library(ALL) and data(ALL)
topGO software error
updated 6.4 years ago by 68k • written 6.4 years ago by ▴ 60
0
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0
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2.2k
views
Comment: C: Boxplot function not showing all reads length on x-axis
6.4 years ago Raito92 ▴ 60
0
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0
replies
2.4k
views
Comment: C: Function kegga not working for species other than the conventional ones - Pathwa
6.5 years ago Raito92 ▴ 60
0
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0
replies
2.4k
views
Comment: C: Function kegga not working for species other than the conventional ones - Pathwa
6.5 years ago Raito92 ▴ 60
5
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4
replies
2.4k
views
Function kegga not working for species other than the conventional ones - Pathways do not overlap with universe
kegga limma pathway analysis kegg
updated 6.5 years ago by 53k • written 6.5 years ago by ▴ 60
0
votes
0
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2.1k
views
Comment: C: Improving the performance of the align function from Rsubread for old Roche454 r
6.5 years ago Raito92 ▴ 60
64 results • Page 1 of 2
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