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4
votes
4
replies
5.1k
views
Clarifications on p-values in enrichResult objects
clusterProfiler reactomepa dose
updated 2.2 years ago by • 0 • written 8.3 years ago by ▴ 660
0
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0
replies
2.0k
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Comment: Comment: Ensuring reproducibility in BiocParallel SingleCellExperiment workflows
3.1 years ago enricoferrero ▴ 660
3
votes
3
replies
2.0k
views
Ensuring reproducibility in BiocParallel SingleCellExperiment workflows
scater SingleCellExperiment BiocParallel scuttle scran
3.2 years ago • updated 3.1 years ago enricoferrero ▴ 660
0
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0
replies
1.5k
views
Comment: Comment: scater::plotHeatmap with swap_rownames gives error
3.2 years ago enricoferrero ▴ 660
2
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3
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1.5k
views
scater::plotHeatmap with swap_rownames gives error
scater
3.2 years ago enricoferrero ▴ 660
0
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0
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1.5k
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Comment: Comment: scater::plotHeatmap with swap_rownames gives error
3.2 years ago enricoferrero ▴ 660
0
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1
reply
3.8k
views
Comment: Comment: Using limma for the analysis of qPCR data
3.9 years ago enricoferrero ▴ 660
3
votes
4
replies
3.8k
views
Using limma for the analysis of qPCR data
NormqPCR EasyqpcR qPCR HTqPCR limma
updated 3.1 years ago by ▴ 380 • written 3.9 years ago by ▴ 660
0
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0
replies
2.9k
views
Comment: Comment: scuttle::aggregateAcrossCells() crashes R on large SingleCellExperiment
3.9 years ago enricoferrero ▴ 660
2
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1
reply
2.9k
views
Comment: Comment: scuttle::aggregateAcrossCells() crashes R on large SingleCellExperiment
3.9 years ago enricoferrero ▴ 660
4
votes
5
replies
2.9k
views
scuttle::aggregateAcrossCells() crashes R on large SingleCellExperiment
scran SingleCellExperiment scuttle scater
updated 3.9 years ago by ★ 28k • written 3.9 years ago by ▴ 660
0
votes
1
reply
7.1k
views
Comment: C: scRNA-seq pseudo-bulk differential expression analysis with pseudobulkDGE()
4.4 years ago enricoferrero ▴ 660
5
votes
4
replies
7.1k
views
scRNA-seq pseudo-bulk differential expression analysis with pseudobulkDGE()
scran scater scuttle
updated 4.4 years ago by ★ 28k • written 4.4 years ago by ▴ 660
0
votes
1
reply
8.0k
views
Comment: C: Cannot connect to ExperimentHub server
4.4 years ago enricoferrero ▴ 660
0
votes
1
reply
8.0k
views
Comment: C: Cannot connect to ExperimentHub server
4.4 years ago enricoferrero ▴ 660
0
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1
reply
8.0k
views
Comment: C: Cannot connect to ExperimentHub server
4.4 years ago enricoferrero ▴ 660
0
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0
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8.0k
views
Comment: C: Cannot connect to ExperimentHub server
4.4 years ago enricoferrero ▴ 660
0
votes
1
reply
8.0k
views
Comment: C: Cannot connect to ExperimentHub server
4.4 years ago enricoferrero ▴ 660
8
votes
16
replies
8.0k
views
Cannot connect to ExperimentHub server
ExperimentHub AnnotationHub SingleR
updated 4.4 years ago by 4.1k • written 4.4 years ago by ▴ 660
0
votes
0
replies
2.6k
views
Comment: C: Using RUVSeq RUVs() to perform batch correction using technical replicates
5.8 years ago enricoferrero ▴ 660
1
vote
3
replies
2.6k
views
Using RUVSeq RUVs() to perform batch correction using technical replicates
RUVSeq ruvseq RUVs DESEq2 deseq2
updated 5.8 years ago by 52k • written 5.8 years ago by ▴ 660
0
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0
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2.5k
views
Comment: C: RNA-seq batch correction using technical replicates profiled across batches
5.8 years ago enricoferrero ▴ 660
4
votes
4
replies
2.5k
views
RNA-seq batch correction using technical replicates profiled across batches
deseq2 ruvseq sva edger limma
updated 5.8 years ago by 52k • written 5.8 years ago by ▴ 660
0
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1
reply
2.5k
views
Comment: C: RNA-seq batch correction using technical replicates profiled across batches
5.8 years ago enricoferrero ▴ 660
0
votes
0
replies
1.7k
views
Comment: C: DESeq2 w. pathway/network info as a prior knowledge
5.8 years ago enricoferrero ▴ 660
0
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1
reply
5.7k
views
Comment: C: [limma] Define contrasts for model with covariates
6.5 years ago enricoferrero ▴ 660
9
votes
3
replies
5.7k
views
[limma] Define contrasts for model with covariates
limma model.matrix makecontrasts
updated 6.5 years ago by 52k • written 6.5 years ago by ▴ 660
0
votes
0
replies
3.4k
views
Comment: C: Invitation to submit articles to the Bioconductor gateway on F1000Research
6.7 years ago enricoferrero ▴ 660
0
votes
1
reply
1.9k
views
Comment: C: Gviz IdeogramTrack fails with Error: failed to load HTTP resource
6.9 years ago enricoferrero ▴ 660
0
votes
4
replies
1.9k
views
Gviz IdeogramTrack fails with Error: failed to load HTTP resource
gviz gviz-package rtracklayer http
6.9 years ago enricoferrero ▴ 660
0
votes
0
replies
1.7k
views
Comment: C: [VariantAnnotation] Preserve query metadata with locateVariants()
7.0 years ago enricoferrero ▴ 660
2
votes
2
replies
1.7k
views
[VariantAnnotation] Preserve query metadata with locateVariants()
variantannotation locatevariants metadata mcols
updated 7.0 years ago by ★ 6.8k • written 7.0 years ago by ▴ 660
2
votes
0
replies
2.2k
views
Answer: A: [gwascat] Updated GWAS catalog from file
7.0 years ago enricoferrero ▴ 660
5
votes
4
replies
2.2k
views
[gwascat] Updated GWAS catalog from file
gwascat
7.0 years ago enricoferrero ▴ 660
0
votes
1
reply
2.2k
views
Comment: C: [gwascat] Updated GWAS catalog from file
7.0 years ago enricoferrero ▴ 660
4
votes
9
replies
2.4k
views
keys() fails on EnsDb.Hsapiens.v75 on Bioc 3.5
ensdb.hsapiens.v75 ensembldb keys
updated 7.6 years ago by ★ 2.1k • written 7.6 years ago by ▴ 660
1
vote
0
replies
2.4k
views
Comment: C: keys() fails on EnsDb.Hsapiens.v75 on Bioc 3.5
7.6 years ago enricoferrero ▴ 660
0
votes
1
reply
2.4k
views
Comment: C: keys() fails on EnsDb.Hsapiens.v75 on Bioc 3.5
7.6 years ago enricoferrero ▴ 660
0
votes
1
reply
2.4k
views
Comment: C: keys() fails on EnsDb.Hsapiens.v75 on Bioc 3.5
7.6 years ago enricoferrero ▴ 660
0
votes
1
reply
2.4k
views
Comment: C: keys() fails on EnsDb.Hsapiens.v75 on Bioc 3.5
7.6 years ago enricoferrero ▴ 660
0
votes
0
replies
1.4k
views
Comment: C: What is the confidence interval in ChIPseeker::plotAvgProf?
7.7 years ago enricoferrero ▴ 660
0
votes
2
replies
1.4k
views
What is the confidence interval in ChIPseeker::plotAvgProf?
chipseeker
7.7 years ago enricoferrero ▴ 660
2
votes
1
reply
3.9k
views
Assign custom dendrogram to ComplexHeatmap Heatmap object
complexheatmap heatmap.2 dendrogram dendextend heatmap
updated 8.1 years ago by ▴ 200 • written 8.1 years ago by ▴ 660
0
votes
0
replies
1.3k
views
Enrichment of GWAS SNPs in regulatory regions
genomicranges enrichment fisher
8.2 years ago enricoferrero ▴ 660
0
votes
1
reply
5.1k
views
Comment: C: Clarifications on p-values in enrichResult objects
8.3 years ago enricoferrero ▴ 660
1
vote
1
reply
2.4k
views
Comment: C: ChIPseeker::vennplot() fails with Error in ss[[1]] : subscript out of bounds
8.5 years ago enricoferrero ▴ 660
3
votes
4
replies
2.4k
views
ChIPseeker::vennplot() fails with Error in ss[[1]] : subscript out of bounds
chipseeker venn vennplot genomicranges granges
8.5 years ago enricoferrero ▴ 660
1
vote
0
replies
2.4k
views
Answer: A: ChIPseeker::vennplot() fails with Error in ss[[1]] : subscript out of bounds
8.5 years ago enricoferrero ▴ 660
1
vote
1
reply
1.7k
views
Custom scoring for subnetworks in BioNet
bionet network
updated 8.5 years ago by ▴ 120 • written 8.5 years ago by ▴ 660
0
votes
0
replies
1.5k
views
Comment: C: Additional high-scoring subnetworks in BioNet
8.5 years ago enricoferrero ▴ 660
150 results • Page 1 of 3
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