0
votes
0
replies
720
views
Problem with datasets (was: Re: Bioconductor digest, Vol 1 #41 - 4 msgs)
geneplotter multtest geneplotter multtest
22.0 years ago Laurent Gautier ★ 2.3k
0
votes
0
replies
2.2k
views
Two bioinformatics positions in Bordeaux, France
SNP Sequencing Genetics Cancer Breast SNP Sequencing Genetics Cancer Breast
14.0 years ago Audrey Kauffmann ▴ 110
0
votes
0
replies
1.4k
views
How to combined multiple *.mol files into a single *.sdf file using ChemmineR?
ChemmineR Chemmin ChemmineOB
3.0 years ago sukissqz • 0
0
votes
0
replies
612
views
enrichplot pakage no output plot
go
4.1 years ago Hamidreza Hashemi ▴ 20
0
votes
0
replies
946
views
reading .gpr w/limma - error (bug??)
marray marray
20.0 years ago Mayte Suarez-Farinas ▴ 300
0
votes
2
replies
879
views
IsoformSwitchAnalyzeR package on mouse data
rnaseq IsoformSwitchAnalyzeR
updated 21 months ago by ▴ 120 • written 22 months ago by • 0
0
votes
0
replies
1.2k
views
KEGG pathway analysis with ReportingTools
Pathways GO ReportingTools Pathways GO ReportingTools
10.1 years ago Mayte Suarez-Farinas ▴ 510
0
votes
0
replies
1.0k
views
compare RNASeq with Exon array data at the gene-level and exon-level
RNASeq Annotation RNASeq Annotation
9.8 years ago shirley zhang ★ 1.0k
0
votes
0
replies
728
views
edgeR, error in estimateCommonDisp
edgeR edgeR
11.8 years ago Gordon Smyth 50k
1
vote
2
replies
1.0k
views
AnnotatedDataFrame crashes MS Visual Studio
affy software error
8.1 years ago Chris • 0
0
votes
0
replies
819
views
lymphGate Preselection Argument
lymphgate
8.1 years ago alee • 0
0
votes
0
replies
611
views
missing doc. pages
21.4 years ago Sek Won Kong, M.D. ▴ 40
0
votes
0
replies
608
views
Reading STDEV in CEL files
affy affy
19.1 years ago Mayte Suarez-Farinas ▴ 300
0
votes
0
replies
471
views
Rsamtools pileup help
Rsamtools pileup
15 months ago JoeMG • 0
0
votes
0
replies
500
views
affyBatch: probes from intensity table not listed in the output of indexProbes()
affy affy
14.3 years ago Mikhail Spivakov ▴ 30
0
votes
1
reply
326
views
HTSeqGenie runs very slow
HTSeqGenie
7 months ago zh9118 • 0
0
votes
0
replies
763
views
best algorithm Affy low end signal
affy gcrma affy gcrma
20.4 years ago Anthony Bosco ▴ 500
0
votes
0
replies
464
views
Installing Bioconductor 1.4 Help Files
Biobase Biobase
20.0 years ago White, Charles E WRAIR-Wash DC ▴ 30
0
votes
0
replies
569
views
Limma: reading in additional spot data (flags)
limma limma
20.3 years ago Edo Plantinga ▴ 50
0
votes
0
replies
1.0k
views
available gene sets for mouse 430.2
14.9 years ago Julien Meunier ▴ 30
0
votes
0
replies
779
views
Loading workspace blocks generic function dispach
affyPLM affyPLM
14.0 years ago Eric Blanc ▴ 10
0
votes
0
replies
298
views
Understanding phenoTest
12.8 years ago khadeeja ismail ▴ 400
0
votes
0
replies
303
views
Subsite info is possible for more studies
curatedMetagenomicData
11 months ago Vitor Heidrich • 0
0
votes
0
replies
710
views
Question about amount of diff expressed genes in fit using a design matrix with intercept
11.5 years ago James W. MacDonald 65k
0
votes
0
replies
743
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation probe Annotation probe
10.6 years ago Nitesh Turaga ▴ 50
0
votes
0
replies
579
views
Working with Binary Categorical Data using WGCNA and Unsigned Networks
WGCNA
2.9 years ago schum266 ▴ 10
0
votes
0
replies
796
views
BioConductor beginner needing to annotate clones
Microarray GUI annotate Microarray GUI annotate
20.5 years ago Law, Annie ▴ 70
0
votes
0
replies
890
views
mt.teststat (multtest)
multtest multtest
18.3 years ago Ann Hess ▴ 340
0
votes
0
replies
1.2k
views
Is there annotation package for Affymetrix Human, Exon 1.0 ST Array on bioconductor?
Annotation probe Annotation probe
13.3 years ago rcaloger ▴ 500
0
votes
0
replies
689
views
background correction on PM only: compute.affinities2()
affy gcrma affy gcrma
14.9 years ago Marianne Tuefferd ▴ 20
0
votes
0
replies
797
views
error with the function GOHyperG from GOstats package
GO GOstats GO GOstats
19.1 years ago Sabrina Carpentier ▴ 70
0
votes
1
reply
579
views
How to find overlaps in genomic sequences comparing patients to themselves
genomicranges
5.6 years ago sbailey5 • 0
0
votes
0
replies
449
views
Positive beta-scores of essential genes in drug-treated cells
mageck MAGeCKFlute CrisprScreen
11 months ago Monika • 0
4
votes
6
replies
4.7k
views
How to design formula in DESeq2 when setting blind=FALSE in rlog transformation?
deseq2 normalization
9.5 years ago Xianjun Dong ▴ 10
0
votes
0
replies
466
views
gate_quad_sequential as parent gate for downstream gating in opencyto CSV template
opencyto FlowCytometry
19 months ago Noël • 0
0
votes
0
replies
755
views
how to analyse single chromosome array CGH data using HMM in aCGH library?
aCGH CGH aCGH aCGH CGH aCGH
17.2 years ago Ruppert Valentino ▴ 270
0
votes
0
replies
945
views
postdoc available
Pathways Network Classification Cancer Pathways Network Classification Cancer
20.4 years ago Jean-Philippe Vert ▴ 10
0
votes
1
reply
625
views
Ballgown for more than 2 group comaprison
stattest function error software error bioconductor
5.6 years ago amy16 • 0
0
votes
0
replies
799
views
beadarray: combining swaths for gene expression
beadarray beadarray
11.7 years ago Thomas Kelder ▴ 10
1
vote
0
replies
1.2k
views
new codelink annotation packages.
Annotation r10kcod probe codelink Annotation r10kcod probe codelink
17.9 years ago Diego Diez ▴ 760
0
votes
0
replies
992
views
CAMDA conference program announcement / early booking discount until 12 Nov!
Microarray ArrayExpress Microarray ArrayExpress
15.5 years ago Dr. D. P. Kreil Boku ▴ 50
0
votes
1
reply
740
views
genome searching with Biostrings and the BSgenome data packages
biostrings
updated 8.0 years ago by 25k • written 8.0 years ago by • 0
0
votes
0
replies
214
views
!SPAM: My or harsh
16.3 years ago Rosanna W. Byrne ▴ 10
0
votes
0
replies
603
views
problems with estimateGLMTrendedDisp()
edgeR edgeR
13.1 years ago Biase, Fernando ▴ 150
0
votes
3
replies
5.1k
views
ridgeplot doesn't work: Error in ans[ypos] <- rep(yes, length.out = len)[ypos] : replacement has length zero
clusterProfiler
updated 19 months ago by • 0 • written 22 months ago by • 0
0
votes
0
replies
1.0k
views
How to compute the "completeness" of a KEGG module using a set of KEGG orthologs? (Module Completion Ratio)
KEGG KEGGREST keggorthology Metagenomics
3.2 years ago jol.espinoz ▴ 40
0
votes
0
replies
1.0k
views
Agilent Feature Extraction Software vs GenePix Pro
Microarray limma Microarray limma
13.4 years ago Juan C Oliveros Collazos ▴ 190
0
votes
0
replies
824
views
FW: Tigre Package question 2
PROcess mmgmos puma PROcess mmgmos puma
10.3 years ago Solanki, Anisha ▴ 60
0
votes
0
replies
766
views
Post-Doctoral Training Fellow
19.0 years ago christopher leeds JIC ▴ 10
0
votes
0
replies
778
views
How to: design matrices for multi organism parts experiment
Organism BRAIN Organism BRAIN
13.0 years ago Hans ▴ 10
1,000 results • Page 2 of 20
Recent ...
Replies
Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Awards • All
Popular Question to euge.eugenio ▴ 20
Popular Question to Dario Strbenac ★ 1.5k
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Koen Van den Berge ▴ 180
Popular Question to shepherl 3.9k
Locations • All
United States, 59 minutes ago
India, 1 hour ago
Melbourne, Australia, 1 hour ago
United States, 2 hours ago
United States, 3 hours ago
Traffic: 418 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6