Biostar ATAC

Showing : ATAC • reset

vote

replies

489

views

diffbind atac

updated 24 months ago by Rory Stark ★ 4.4k • written 24 months ago by lindsaynhayes • 0

vote

171

views

r DiffBind ATAC

updated 2.2 years ago by Rory Stark ★ 4.4k • written 2.2 years ago by lindsaynhayes • 0

votes

replies

563

views

limma edger atac atac-seq

updated 2.2 years ago by Aaron Lun ★ 27k • written 2.2 years ago by pgugger ▴ 60

votes

replies

284

views

deseq2 design formula design matrix edgeR ATAC

updated 2.4 years ago by Gordon Smyth 45k • written 2.4 years ago by corinne_hutfilz • 0

votes

replies

400

views

Diffbind ATAC batch correction blocking factor

updated 2.8 years ago by Rory Stark ★ 4.4k • written 2.8 years ago by rm1238 • 0

votes

replies

852

views

ATACseqQC ATAC ATACseq software error Tutorial

updated 2.9 years ago by Steve Lianoglou 13k • written 2.9 years ago by mbasam • 0

vote

1.4k

views

subread featurecounts atac

updated 3.1 years ago by Wei Shi ★ 3.4k • written 3.1 years ago by aurel.nagy ▴ 10

votes

574

views

diffbind ATACseq ATAC counts differential analysis

updated 3.2 years ago by Rory Stark ★ 4.4k • written 3.2 years ago by pgontarz ▴ 10

votes

replies

1.6k

views

diffbind atac

updated 3.2 years ago by Rory Stark ★ 4.4k • written 3.2 years ago by paz2005 • 0

vote

replies

2.6k

views

diffbind atac

5.0 years ago • updated 4.9 years ago niu.shengyong • 0

votes

replies

3.5k

views

ATAC differential binding analysis no replicates DEseq2 chromatin

5.2 years ago YaGalbi ▴ 20

votes

1.0k

views

Diffbind Atac adapters

updated 5.2 years ago by Rory Stark ★ 4.4k • written 5.2 years ago by YaGalbi ▴ 20

votes

replies

1.9k

views

atac-seq atac deseq2 sva combat

updated 5.2 years ago by Michael Love 36k • written 5.2 years ago by g.atla ▴ 10

votes

replies

4.6k

views

Chipseq DNAseq ATAC bayespeak narrowpeaks

updated 7.0 years ago by Gordon Smyth 45k • written 7.0 years ago by samuel collombet ▴ 140

14 results • Page 1 of 1

Recent ...

Replies

Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array by Guido Hooiveld ★ 3.2k

Regarding the normalization method (SCAN); I have only used RMA for the reasons James explained in one of your other threads (https://suppo…

Answer: UniprotKB AC/ID to Entrez ID Conversion by Guido Hooiveld ★ 3.2k

The key to realize is that your input is a vector of Uniprot **ID**s (also known as 'entry names') . The central identifier in the Uniprot …

Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array by Yang Shi • 0

Thanks sir! The normalization of SCAN not only log2 but also center to zero transformation. But in my opinion, the latter (center to 0) is …

Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array by Yang Shi • 0

Thanks sir! I got it now!

Comment: Reading multiple data segments from FCS 3.0 file by SamGG ▴ 270

You should better start a question, but here is some clues. While this operation is refered as concatenate you can find it as coerce in flo…

Votes

Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array

Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook

Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook

A: coefficient not estimable (limma warning)

Awards • All

Scholar to Guido Hooiveld ★ 3.2k

Scholar to Kevin Blighe 3.5k

Scholar to SamGG ▴ 270

Prophet to johnmcma ▴ 10