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limma with interaction term
R biostatistics limma Epigenetics
12 weeks ago • updated 9 weeks ago Jitendra ▴ 10
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limma design model for categorical variable
DNAMethylation limmaGUI biostatistics limma
updated 12 weeks ago by 50k • written 12 weeks ago by ▴ 10
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Job: Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
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23 months ago helene.ruffieux • 0
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Job: Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
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2.2 years ago helene.ruffieux • 0
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Job: Job opening - Data Scientist II - Fred Hutchinson Cancer Research Center
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2.2 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Post-Doctoral Research Fellow, Biostatistics - Seattle, WA
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3.9 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Data Sciences Statistician - Dana-Farber Cancer Institute
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4.2 years ago Patrick Kimes ▴ 10
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Job: Metabolomics Bioinformatics Postdoc Position at Steno Diabetes Center Copenhagen
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4.2 years ago Tommi Suvitaival ▴ 10
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Job: Post-Doctoral Research Fellow, Biostatistics, Bioinformatics and Computational Biology - Fred Hutchinson Cancer Research Center - Seattle, WA
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4.6 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Biostatistics Analyst (80-100%) at NEXUS Personalized Health Technologies, ETH Zurich, Switzerland
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4.8 years ago Michael Prummer • 0
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Job: Statistician I - Department of Data Sciences, Dana-Farber Cancer Institute
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5.1 years ago Patrick Kimes ▴ 10
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Job: Postdoctoral positions in drug discovery and genome data science
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5.2 years ago Thomas Girke ★ 1.7k
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Job: Biostatistics Analyst II - high throughput single-cell assays
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5.2 years ago careers • 0
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Job: Biostatistics Scientist II - high throughput single-cell assays
Biostatistics Job
5.2 years ago careers • 0
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Job: Data scientist postdoctoral position at Johns Hopkins
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5.3 years ago hjaarop1 • 0
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Job: Postdoctoral Position: Bioinformatics/data science
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5.4 years ago l.tomalin1987 • 0
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Job: PhD and PostDoc position in computational cancer biology in Milan
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5.5 years ago marschaefer • 0
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Job: Statistical Research Associate
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6.0 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Postdoctoral Fellowship in Statistical Genetics and Genomics at the University of Michigan
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6.1 years ago xzhousph • 0
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Job: APPLIED RESEARCH SCIENTIST II, Cancer Epidemiology dept., Moffitt Cancer Center, Tampa, FL
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6.2 years ago claudia.lopez-matamoros • 0
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Job: Bioinformatician/Biostatistician - Institute of Medical Biostatistics, Epidemiology and Informatics (IMBEI), Mainz, Germany
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6.3 years ago Federico Marini ▴ 150
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2.8k
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DESeq2 and betaPrior
deseq2 biostatistics
6.7 years ago Elena Grassi ▴ 10
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Job: Research Fellow or Junior Research Fellow, Statistical Genetics and Genomics, Australia
biostatistics genetics Job
7.0 years ago hong.lee • 0
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1.3k
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News: May Institute Computation and statistics for mass spectrometry and proteomics
proteomics mass spectrometry biostatistics News
7.2 years ago Laurent Gatto 1.6k
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Job: (Bio-)Statistician at dkfz, Heidelberg, Germany
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7.5 years ago m.hummel ▴ 10
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Job: PhD student, Bioinformatician and Bioinformatic Data Manager positions in the areas of Bioinformatics and Biostatistics at the University Medical Cen…
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7.9 years ago • updated 7.8 years ago Frank Kramer ▴ 60
3
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Job: PhD Positions in Computational Cancer Research
jobs bioinformatics biostatistics cancer next-generation sequencing Job
8.0 years ago Bernd Fischer ▴ 550
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3
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1.6k
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Calculating a score from fold change matrix of pair-wise rna-seq data
rna-seq deseq2 differential gene expression biostatistics
8.1 years ago g.atla ▴ 10
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1.8k
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Job: Data scientist/bioinformatician - Paris
Genomics metabolomics biostatistics data integration Job
8.5 years ago David Enot ▴ 30
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Job: PhD student and post-doctoral position (computational, molecular medicine)
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8.8 years ago Simon Anders ★ 3.7k
30 results • Page 1 of 1
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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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