Bioconductor Biseq

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788

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BiSeq

2.8 years ago thomas.koefoed • 0

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900

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Biseq Methylation DMP DMR RRBS

4.3 years ago i.s.castanho • 0

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1.1k

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bedgraph .cov wig biseq coverage

4.4 years ago akhaira • 0

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870

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BiSeq testClusters error dmr

4.4 years ago akhaira • 0

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1.2k

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biseq beta regression

4.4 years ago akhaira • 0

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580

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Biseq

4.4 years ago akhaira • 0

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1.5k

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BiSeq DMR

updated 4.4 years ago by James W. MacDonald 67k • written 4.4 years ago by akhaira • 0

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714

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BiSeq Coldata

4.5 years ago akhaira • 0

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795

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biseq R methylation

4.5 years ago AishaD • 0

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753

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biseq betaRegression RRBS Methylation

4.7 years ago i.s.castanho • 0

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878

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BiSeq Wald test Beta regression

5.8 years ago mira • 0

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1.1k

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biseq package installation r

updated 5.9 years ago by Martin Morgan 25k • written 5.9 years ago by lwh863 • 0

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1.1k

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biseq ccle

6.3 years ago spr ▴ 10

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1.2k

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dna methylation biseq

updated 6.9 years ago by Gordon Smyth 51k • written 6.9 years ago by ahmad.moousavi • 0

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1.3k

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biseq RRBS betaregression

7.6 years ago l.eijssen • 0

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1.5k

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biseq methylation dmr analysis

updated 7.9 years ago by Katja Hebestreit ▴ 130 • written 7.9 years ago by jjalmagro • 0

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2.1k

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biseq error trimClusters

updated 8.8 years ago by Katja Hebestreit ▴ 130 • written 8.9 years ago by kms68 • 0

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1.8k

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methylation linear model dmr bsseq biseq

9.0 years ago enricoferrero ▴ 660

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2.1k

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BiSeq readBismark

updated 9.1 years ago by James W. MacDonald 67k • written 9.1 years ago by Neel Aluru ▴ 460

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2.8k

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dmr methylation deseq2 bsseq biseq

updated 9.1 years ago by Kasper Daniel Hansen ★ 6.5k • written 9.1 years ago by enricoferrero ▴ 660

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3.5k

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biseq fdr data results

9.6 years ago • updated 9.5 years ago mnaymik ▴ 10

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2.3k

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biseq RRBS SAAP-BS coverage

9.6 years ago maria.maqueda • 0

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1.9k

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BiSeq BiSeq

updated 10.8 years ago by David Iles ▴ 130 • written 10.8 years ago by Hans-Ulrich Klein ▴ 330

23 results • Page 1 of 1

Recent ...

Replies

Answer: Deseq2 res Function by Michael Love 43k

> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…

Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Answer: Create Illmina bead summary data by Gordon Smyth 51k

GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

Votes

Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

Comment: ANOVA like approach of edgeR

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