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Cytoscape
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Going back to default settings in RCy3
Cytoscape
RCy3
RCy
updated 4 months ago by
alex.pico
▴ 20 • written 4 months ago by
David R
▴ 90
3
votes
7
replies
1.2k
views
"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape
RCy3
Networkvisualization
WGCNA
12 months ago • updated 11 months ago
Ortega-C
▴ 10
0
votes
0
replies
828
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape
Heatmap
heatmaps
WGCNA
15 months ago
gianni.drm
• 0
0
votes
1
reply
740
views
Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3
Cytoscape
R
Newick
Bioconductor
updated 3.4 years ago by
alex.pico
▴ 20 • written 3.8 years ago by
ellisjc
• 0
3
votes
4
replies
1.4k
views
Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3
Cytoscape
Rgraphviz
GOstats
5.0 years ago
Matthew Thornton
▴ 350
1
vote
0
replies
1.7k
views
Exploring upstream regulators (transcription factors, drugs, etc) of transcripts in R
microarray
bioconductor
cytoscape
mapfromtranscripts
5.6 years ago
lm795
▴ 10
0
votes
0
replies
1.0k
views
Help with generating network from gene expression data
gene expression
network
cytoscape
6.3 years ago
torgeirous
• 0
6
votes
8
replies
8.3k
views
WGCNA export to cytoscape
wgcna
cytoscape
updated 6.3 years ago by
harelarik
▴ 60 • written 7.0 years ago by
2323982403
▴ 60
0
votes
1
reply
1.2k
views
WGNA export to external software
WGCNA
network visualization
external software
cytoscape
updated 6.6 years ago by
Peter Langfelder
★ 3.0k • written 6.6 years ago by
je.maxfield
• 0
9 results • Page
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Answer: Differential gene expression analysis results
by
ATpoint
★ 4.1k
Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…
Comment: deseq2 results
by
sajadahmad41454
• 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Comment: deseq2 results
by
swbarnes2
★ 1.4k
It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…
Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Dylan.Sheerin
• 0
Thank you very much, Gordon. I'll give voomLmFit a go!
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Gordon Smyth
50k
Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…
Votes
Comment: deseq2 results
Comment: deseq2 results
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
Answer: Extremely small p-values using Limma for proteomic data
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