Bioconductor DNA Methylation

Showing : DNA Methylation • reset

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1.6k

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R gdc rna-seq dna methylation

updated 5.5 years ago by Sean Davis 21k • written 5.5 years ago by RichardJActon ▴ 50

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1.8k

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tcgabiolinks dna methylation

updated 6.4 years ago by Marcel Ramos 690 • written 6.4 years ago by michaelwxf2012 • 0

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1.8k

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normalization DNA methylation WGCNA

updated 4.9 years ago by Peter Langfelder ★ 3.0k • written 4.9 years ago by enora.fremy • 0

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984

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microarray HM450 dna methylation cohcap

updated 7.3 years ago by James W. MacDonald 65k • written 7.3 years ago by poojitha.stemcell ▴ 10

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1.5k

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dna methylation illimina 450k methylation beta M significance

updated 6.6 years ago by James W. MacDonald 65k • written 6.6 years ago by skids121 • 0

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969

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medips medip-seq dna methylation dmr analysis

updated 5.4 years ago by Lukas Chavez ▴ 570 • written 5.4 years ago by mtefit • 0

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1.1k

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minfi normalization outliers dna methylation densityplot

5.8 years ago peter.fransquet • 0

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932

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minfi cell proportion estimateCellCounts DNA Methylation

4.1 years ago grayapply2009 • 0

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1.2k

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CNV minfi preprocessing dna methylation

7.1 years ago Thomas • 0

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1.1k

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dna methylation biseq

updated 6.4 years ago by Gordon Smyth 50k • written 6.4 years ago by ahmad.moousavi • 0

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1.0k

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rnbeads methylation methylationepic dna methylation

6.2 years ago gabrielrfries • 0

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748

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differential variability dna methylation iEVORA DVP

6.0 years ago poojitha.stemcell ▴ 10

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1.1k

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minfi bumphunter DNA methylation illumina450k

updated 7.9 years ago by James W. MacDonald 65k • written 7.9 years ago by fleur_p90 • 0

13 results • Page 1 of 1

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Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k

I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?

Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k

If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…

Comment: Memory errors using read.bismark? by Juan Higareda • 0

Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…

Answer: meffil.snp.concordance by James W. MacDonald 65k

This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…

Answer: minfi latest update for EPIC V2 chip by James W. MacDonald 65k

Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…

Votes

Answer: How to save the DEXSeq results

Answer: minfi support of illumina Infinium methylationEPIC v2.0

Comment: minfi support of illumina Infinium methylationEPIC v2.0

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Help with running egsea()

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