Bioconductor Differential analysis

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DiffBind PCA Differential Analysis

updated 4.6 years ago by Rory Stark ★ 5.2k • written 4.6 years ago by jrp208 • 0

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1.6k

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diffbind ATACseq ATAC counts differential analysis

updated 5.6 years ago by Rory Stark ★ 5.2k • written 5.6 years ago by pgontarz ▴ 10

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1.4k

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diffbind differential analysis genetics #chip-seq

updated 5.7 years ago by Rory Stark ★ 5.2k • written 5.7 years ago by ryclb22 • 0

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1.5k

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edgeR FDR p-value Benjamini-Hochberg Differential Analysis

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by ilovesuperheroes1993 • 0

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1.3k

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diffbind atac-seq differential analysis deseq2

updated 6.0 years ago by Rory Stark ★ 5.2k • written 6.0 years ago by duvaller • 0

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1.7k

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deseq2 deseq differential analysis proteomics

6.6 years ago blehtine • 0

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1.3k

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differential analysis differential gene expression coexpression correlation

updated 6.7 years ago by Peter Langfelder ★ 3.0k • written 6.7 years ago by hkarakurt ▴ 20

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2.3k

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mast single-cell rna-seq differential analysis

updated 6.8 years ago by Andrew_McDavid ▴ 270 • written 6.8 years ago by shao ▴ 100

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1.3k

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reportingtools microarray annotation differential expression differential analysis

updated 6.9 years ago by James W. MacDonald 67k • written 6.9 years ago by jirkanov • 0

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4.5k

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deseq2 multiple factor design differential analysis differential gene expression

updated 7.0 years ago by Michael Love 42k • written 7.0 years ago by hsbio ▴ 10

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2.7k

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DiffBind dba.count Chip-Seq Differential analysis

updated 3.6 years ago by Goku • 0 • written 7.1 years ago by urjaswita ▴ 40

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Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0

Not really, we are testing some toxic compounds to identify genes that are activated in response to the toxic exposure. Genes that change o…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Hi again, Thank you for the response! Can you expound on why it is not a good idea? I realize that the expression levels/differential expr…

Answer: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

No, that's not a good idea at all. You should be doing a meta-analysis with these data rather than trying to combine like that. `GeneMeta` …

Answer: GOstats kegg analysis in wheat - help - none of the objects in the first column by James W. MacDonald 67k

Check the help page for `KEGGFrame`. Your columns are out of order.

Comment: Question about using LRT test for time course experiments with DESeq2 by James W. MacDonald 67k

You are testing the interaction, so you are asking for those genes that change at any time *differently, depending on the treatment*. If co…

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Answer: DecideTest vs topTAGs in edgeR

Comment: DESeq Input from Salmon + tximport/tximeta

Answer: DESeq Input from Salmon + tximport/tximeta

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Popular Question to Assa Yeroslaviz ★ 1.5k