Bioconductor Differential analysis

Showing : Differential analysis • reset

vote

1.0k

views

DiffBind PCA Differential Analysis

updated 4.8 years ago by Rory Stark ★ 5.2k • written 4.8 years ago by jrp208 • 0

votes

1.6k

views

diffbind ATACseq ATAC counts differential analysis

updated 5.8 years ago by Rory Stark ★ 5.2k • written 5.8 years ago by pgontarz ▴ 10

votes

1.4k

views

diffbind differential analysis genetics #chip-seq

updated 5.8 years ago by Rory Stark ★ 5.2k • written 5.8 years ago by ryclb22 • 0

votes

1.6k

views

edgeR FDR p-value Benjamini-Hochberg Differential Analysis

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by ilovesuperheroes1993 • 0

votes

1.4k

views

diffbind atac-seq differential analysis deseq2

updated 6.2 years ago by Rory Stark ★ 5.2k • written 6.2 years ago by duvaller • 0

vote

replies

1.8k

views

deseq2 deseq differential analysis proteomics

6.7 years ago blehtine • 0

votes

1.3k

views

differential analysis differential gene expression coexpression correlation

updated 6.8 years ago by Peter Langfelder ★ 3.0k • written 6.8 years ago by hkarakurt ▴ 20

votes

replies

2.4k

views

mast single-cell rna-seq differential analysis

updated 7.0 years ago by Andrew_McDavid ▴ 270 • written 7.0 years ago by shao ▴ 100

votes

replies

1.4k

views

reportingtools microarray annotation differential expression differential analysis

updated 7.0 years ago by James W. MacDonald 67k • written 7.0 years ago by jirkanov • 0

vote

replies

4.7k

views

deseq2 multiple factor design differential analysis differential gene expression

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by hsbio ▴ 10

vote

replies

2.8k

views

DiffBind dba.count Chip-Seq Differential analysis

updated 3.8 years ago by Goku • 0 • written 7.3 years ago by urjaswita ▴ 40

11 results • Page 1 of 1

Recent ...

Replies

Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0

This is useful information.

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0

Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…

Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0

Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…

Votes

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

Awards • All

Teacher to dsull ▴ 40