Showing : Differential analysis • reset
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DiffBind in depth explanation
DiffBind PCA Differential Analysis
updated 4.7 years ago by ★ 5.2k • written 4.7 years ago by • 0
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1
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1.6k
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Using DiffBind with only a counts table?
diffbind ATACseq ATAC counts differential analysis
updated 5.7 years ago by ★ 5.2k • written 5.7 years ago by ▴ 10
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DiffBind - Counting reads - counts not found
diffbind differential analysis genetics #chip-seq
updated 5.7 years ago by ★ 5.2k • written 5.7 years ago by • 0
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Dependence of FDR and P-values on sample size
edgeR FDR p-value Benjamini-Hochberg Differential Analysis
updated 5.7 years ago by ★ 28k • written 5.7 years ago by • 0
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1.3k
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Use DiffBind to find differential peaks among multiple cell types
diffbind atac-seq differential analysis deseq2
updated 6.1 years ago by ★ 5.2k • written 6.1 years ago by • 0
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Deseq2 with replicate mean and variance information
deseq2 deseq differential analysis proteomics
6.6 years ago blehtine • 0
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Differential Coexpression Analysis
differential analysis differential gene expression coexpression correlation
updated 6.7 years ago by ★ 3.0k • written 6.7 years ago by ▴ 20
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single-cells RNA-seq analysis by MAST with unbalanced group size
mast single-cell rna-seq differential analysis
updated 6.9 years ago by ▴ 270 • written 6.9 years ago by ▴ 100
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How to add more columns to ReportingTools output?
reportingtools microarray annotation differential expression differential analysis
updated 6.9 years ago by 67k • written 6.9 years ago by • 0
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deseq2 analysis with multiple factors and interaction terms
deseq2 multiple factor design differential analysis differential gene expression
updated 7.0 years ago by 42k • written 7.0 years ago by ▴ 10
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Problem reading Bed file using dba.count in DiffBind
DiffBind dba.count Chip-Seq Differential analysis
updated 3.7 years ago by • 0 • written 7.2 years ago by ▴ 40
11 results • Page 1 of 1
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Answer: ANOVA like approach of edgeR by Gordon Smyth 51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data by Gordon Smyth 51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?
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Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom
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