Showing : GSVA • reset
0
votes
2
replies
73
views
Identifying potentially associated gene set to drug response using GSVA
drug RNASeq GSVA
written 2 days ago by • 0
1
vote
4
replies
707
views
GSVA ssGSEA vs. Broad implementation of ssGSEA
enrichment GSVA ssGSEA
updated 26 days ago by ▴ 10 • written 6 weeks ago by ▴ 10
0
votes
1
reply
1.1k
views
Job: Research software engineer at UPF Barcelona
JobPosting Devel GSVA Software
written 24 months ago by ★ 3.4k
0
votes
1
reply
441
views
Should the expression data be filtered for `Protein-Coding Genes` before Running ssGSEA?
ssgsea GSVA gsea
updated 3 months ago by ★ 1.0k • written 3 months ago by • 0
1
vote
4
replies
1.4k
views
Should I perform batch correction of normalized RNA-seq counts prior to GSVA?
GSVA GSVAdata RNAseq
4 months ago Lucy ▴ 60
1
vote
1
reply
415
views
GSVA 1.52.2 (new API) nb of workers?
parallelize workers GSVA
updated 5 months ago by ★ 1.0k • written 5 months ago by • 0
1
vote
2
replies
452
views
Interpretation of GSVA with absRanking=TRUE
GSVA
5 months ago gad.abraham • 0
0
votes
3
replies
824
views
GSVA function
DESeq2 GSVA ssGSEA
updated 5 months ago by ★ 3.4k • written 6 months ago by • 0
4
votes
5
replies
983
views
Method to find pathways different between 2 groups
fgsea GSVA CAMERA
6 months ago Chris ▴ 20
0
votes
0
replies
323
views
Could we detect difference at pathway level but not significant different at gene level?
GSVA
6 months ago Chris ▴ 20
1
vote
2
replies
3.3k
views
GSVA error
GSVA
7 months ago Alex • 0
1
vote
6
replies
863
views
GSVA on separate healthy and disease datasets
GSVA
updated 7 months ago by 67k • written 7 months ago by ▴ 60
4
votes
4
replies
2.0k
views
How should I run ssGSEA Hallmark Enrichment Analysis?
ssgsea GSVA biotype proteincoding msigdb
updated 7 weeks ago by • 0 • written 11 months ago by ▴ 200
0
votes
1
reply
628
views
GSVA exceeds 1
GSVA
updated 14 months ago by ★ 3.4k • written 15 months ago by • 0
4
votes
2
replies
2.0k
views
Gene set analysis: GSVA, Z-Score, and fold-changes
GSVA RNASeq limma
updated 16 months ago by 51k • written 16 months ago by ▴ 10
2
votes
0
replies
1.7k
views
How to aggregate pseudobulks: Normalization & Log-Transformation
pseudobulk scRNAseq GSVA
19 months ago Tadeoye ▴ 20
0
votes
2
replies
1.1k
views
GSVA with and without absolute scaling method
GSVA
19 months ago arashdeep singh • 0
2
votes
4
replies
1.9k
views
Failed to install Biobase
GSVA Biobase
updated 20 months ago by 67k • written 20 months ago by • 0
2
votes
6
replies
2.4k
views
How can I avoid artifacts in gene set/pathway scoring by UCell and similar algorithms?
escape UCell GSVA
updated 11 months ago by • 0 • written 21 months ago by • 0
0
votes
3
replies
1.1k
views
GSVA: Error loading interactive web app
igsva GSVA
updated 21 months ago by ★ 3.4k • written 21 months ago by ▴ 40
0
votes
3
replies
1.8k
views
GSVA results interpretation
GSVA
updated 22 months ago by ★ 3.4k • written 22 months ago by • 0
0
votes
0
replies
1.0k
views
Trying to use a NanoString expression set with batch effects to do GSVA
GSVA Normalization BatchEffect GSVAdata NanoString
22 months ago Zhijie • 0
1
vote
5
replies
2.0k
views
'combined score' calculation with singscore vs gsva
singscore GSVA
2.1 years ago • updated 2.0 years ago rocanja ▴ 60
5
votes
9
replies
2.3k
views
GSVA perfomed on RSEM Expected Count data
GSVA RNA-Seq RSEM Expected_Count
2.3 years ago Yang Shi ▴ 10
3
votes
4
replies
2.6k
views
Why Negative value from GSVA
GSVA RNASeq edgeR
2.4 years ago Yang Shi ▴ 10
0
votes
3
replies
2.7k
views
Should 0 values for gene counts be removed prior to ssGSEA/GSVA analysis?
GSEA GSVA
updated 2.1 years ago by ▴ 60 • written 2.4 years ago by • 0
1
vote
2
replies
1.4k
views
Can GSVA be applied in several sample type and each type only have two replicates ?
GSVA
3.2 years ago • updated 2.5 years ago Guandong Shang ▴ 40
2
votes
2
replies
1.9k
views
How to run GSVA with partially NA genes
GSVA
2.5 years ago blakebowen • 0
1
vote
3
replies
7.5k
views
GSVA and ssGSEA output differences
enrichment GSVA enrichplot ssGSEA
updated 2.6 years ago by ★ 3.4k • written 2.6 years ago by • 0
1
vote
1
reply
1.7k
views
Cleaning GeneSets from GSEA
msigdb GSEABase GSVA
updated 2.7 years ago by ★ 3.4k • written 2.7 years ago by • 0
0
votes
1
reply
975
views
Running PLAGE gets killed
GSVA SingleCellData
updated 2.7 years ago by ★ 3.4k • written 2.7 years ago by • 0
0
votes
1
reply
1.6k
views
GSVA: for a pathway, can enrichment scores of all samples be negative?
GSVAdata GSVA
updated 2.7 years ago by ★ 3.4k • written 2.7 years ago by • 0
0
votes
1
reply
1.6k
views
GSVA package normalization on gene-length ?
GSVA
updated 2.9 years ago by ★ 3.4k • written 2.9 years ago by • 0
1
vote
11
replies
3.0k
views
Error in .local(expr, gset.idx.list, ...) : Please install the nnotation package hgu95a, but I can't install hgu95a
GSVA
updated 3.3 years ago by ▴ 10 • written 4.2 years ago by • 0
2
votes
2
replies
2.4k
views
Questions regard to GSVA and Limma
limma GSVA
3.4 years ago Chenxi • 0
2
votes
2
replies
1.0k
views
Turn of GSVA filtering for method ssGSEA
GSVA
3.4 years ago k.vitting.seerup ▴ 120
2
votes
7
replies
2.9k
views
Issue with GSVA using dgCMatrix
GSVA
updated 8 months ago by ▴ 10 • written 3.4 years ago by • 0
0
votes
1
reply
3.8k
views
GSVA Problem
GSVA
updated 3.5 years ago by ★ 3.4k • written 3.5 years ago by • 0
6
votes
4
replies
2.0k
views
Discrepancy in GSVA for Nanostring when using normalized counts vs rlog as input
GSVA
3.8 years ago hanyin.wang88 ▴ 10
0
votes
8
replies
7.1k
views
GSVA Error in .mapGeneSetsToFeatures(mapped.gset.idx.list, rownames(expr))
GSVA
updated 2.2 years ago by ★ 3.4k • written 3.8 years ago by • 0
2
votes
3
replies
2.3k
views
Selecting or not selecting samples before running GSVA
GSVA
updated 3.9 years ago by ★ 3.4k • written 3.9 years ago by ▴ 20
0
votes
3
replies
1.8k
views
GSVA on gene sets with 2 genes
GSVA gene sets RNA-seq
updated 4.1 years ago by ★ 3.4k • written 4.1 years ago by ▴ 70
0
votes
1
reply
1.4k
views
Extract GSVA gene rank matrix
gsva
updated 4.3 years ago by ★ 3.4k • written 4.3 years ago by • 0
2
votes
1
reply
2.6k
views
pre-filtering gene sets for GSVA/ssGSEA
gsea ssgsea gsva pathways
updated 4.4 years ago by ★ 3.4k • written 4.4 years ago by ▴ 50
2
votes
2
replies
2.2k
views
Using GSVA All the pathway score are same
GSVA scRNA-seq data
updated 4.4 years ago by ★ 3.4k • written 4.4 years ago by • 0
2
votes
10
replies
4.3k
views
How to compare two or more GSVA outputs, when it is not possible to run GSVA at once
gsva
updated 4.4 years ago by ★ 3.4k • written 4.4 years ago by ▴ 20
0
votes
1
reply
1.8k
views
GSVA on integrated/batch corrected scRNAseq data
GSVA Job
updated 4.5 years ago by ★ 3.4k • written 4.5 years ago by • 0
1
vote
12
replies
2.9k
views
GSVA (running group samples separately)
GSVA
updated 4.5 years ago by ★ 3.4k • written 4.5 years ago by ▴ 30
7
votes
11
replies
3.0k
views
Updating Gene Annotation in GeneSetCollection {GSEABase}
GSEABase annotation gsea gsva GeneSetCollection
updated 4.6 years ago by ★ 3.4k • written 4.6 years ago by ▴ 60
1
vote
1
reply
2.2k
views
Method and kcdf arguments in gsva package
GSVA
updated 4.6 years ago by ★ 3.4k • written 4.6 years ago by ▴ 10
50 results • Page 1 of 1
Recent ...
Replies
Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
Votes
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
Awards • All
Popular Question to Fred Hutch (Recruiting) ▴ 40
Scholar to Gordon Smyth 51k
Popular Question to chase.mateusiak • 0
Scholar to James W. MacDonald 67k
Popular Question to JennyS • 0
Locations • All
WEHI, Melbourne, Australia, 10 minutes ago
France, 23 minutes ago
United States, 54 minutes ago
The city by the bay, 1 hour ago
United States, 3 hours ago
Traffic: 499 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6