Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
GSVA
•
reset
1
vote
2
replies
371
views
Can limma be used with module eigengenes instead of genes?
limma
WGCNA
GSVA
written 4 months ago by
A.Barden
▴ 20
1
vote
2
replies
1.5k
views
GSVA 1.52.2 (new API) nb of workers?
parallelize
workers
GSVA
written 18 months ago by
johanna.galvis
• 0
1
vote
1
reply
2.1k
views
GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct" and "unused arguments (exprsData = as.matrix(rna_seq_sub), gset.idx…
GSVA
updated 10 months ago by
ATpoint
★ 5.0k • written 10 months ago by
amien.vp
• 0
5
votes
5
replies
2.2k
views
Unused arguments error without used arguments in GSVA?
GSVA
updated 9 months ago by
michaelarringtony
• 0 • written 11 months ago by
1sunmic2
• 0
1
vote
2
replies
1.2k
views
Pre-filtering TPM kallisto for ssGSEA / DESeq2
tximport
DESeq2
GSVA
12 months ago
georgii.vdovin
• 0
1
vote
5
replies
1.3k
views
Identifying potentially associated gene set to drug response using GSVA
drug
RNASeq
GSVA
written 13 months ago by
Kent
• 0
5
votes
4
replies
3.1k
views
GSVA ssGSEA vs. Broad implementation of ssGSEA
enrichment
GSVA
ssGSEA
updated 14 months ago by
Tyler Sagendorf
▴ 10 • written 15 months ago by
Bob
▴ 30
0
votes
1
reply
1.6k
views
Job:
Research software engineer at UPF Barcelona
JobPosting
Devel
GSVA
Software
written 3.1 years ago by
Robert Castelo
★ 3.4k
0
votes
1
reply
1.2k
views
Should the expression data be filtered for `Protein-Coding Genes` before Running ssGSEA?
ssgsea
GSVA
gsea
updated 16 months ago by
Axel Klenk
★ 1.1k • written 16 months ago by
Bioinformagician
• 0
1
vote
4
replies
2.7k
views
Should I perform batch correction of normalized RNA-seq counts prior to GSVA?
GSVA
GSVAdata
RNAseq
17 months ago
Lucy
▴ 60
1
vote
2
replies
1.0k
views
Interpretation of GSVA with absRanking=TRUE
GSVA
19 months ago
gad.abraham
• 0
0
votes
3
replies
2.1k
views
GSVA function
DESeq2
GSVA
ssGSEA
updated 19 months ago by
Robert Castelo
★ 3.4k • written 19 months ago by
michelafrancesconi8
• 0
4
votes
5
replies
2.0k
views
Method to find pathways different between 2 groups
fgsea
GSVA
CAMERA
20 months ago • updated 19 months ago
Chris
▴ 20
0
votes
1
reply
1.2k
views
Could we detect difference at pathway level but not significant different at gene level?
GSVA
written 20 months ago by
Chris
▴ 20
1
vote
2
replies
6.2k
views
GSVA error
GSVA
20 months ago
Alex
• 0
1
vote
6
replies
1.6k
views
GSVA on separate healthy and disease datasets
GSVA
updated 20 months ago by
James W. MacDonald
68k • written 21 months ago by
Lucy
▴ 60
4
votes
4
replies
5.2k
views
How should I run ssGSEA Hallmark Enrichment Analysis?
ssgsea
GSVA
biotype
proteincoding
msigdb
updated 15 months ago by
tifaGis
• 0 • written 2.1 years ago by
snijesh
▴ 200
0
votes
1
reply
972
views
GSVA exceeds 1
GSVA
updated 2.3 years ago by
Robert Castelo
★ 3.4k • written 2.3 years ago by
Heba
• 0
4
votes
2
replies
3.5k
views
Gene set analysis: GSVA, Z-Score, and fold-changes
GSVA
RNASeq
limma
updated 2.5 years ago by
Gordon Smyth
53k • written 2.5 years ago by
Jonathan
▴ 10
2
votes
0
replies
2.6k
views
How to aggregate pseudobulks: Normalization & Log-Transformation
pseudobulk
scRNAseq
GSVA
2.7 years ago
Tadeoye
▴ 20
0
votes
2
replies
1.6k
views
GSVA with and without absolute scaling method
GSVA
2.7 years ago
arashdeep singh
• 0
2
votes
4
replies
2.8k
views
Failed to install Biobase
GSVA
Biobase
updated 2.8 years ago by
James W. MacDonald
68k • written 2.8 years ago by
johann.brisseau
• 0
3
votes
6
replies
3.7k
views
How can I avoid artifacts in gene set/pathway scoring by UCell and similar algorithms?
escape
UCell
GSVA
updated 2.1 years ago by
arina
▴ 10 • written 2.9 years ago by
Omer
• 0
0
votes
3
replies
1.6k
views
GSVA: Error loading interactive web app
igsva
GSVA
updated 2.9 years ago by
Robert Castelo
★ 3.4k • written 2.9 years ago by
sharvari gujja
▴ 40
0
votes
3
replies
2.8k
views
GSVA results interpretation
GSVA
updated 3.0 years ago by
Robert Castelo
★ 3.4k • written 3.0 years ago by
munta.jihad
• 0
0
votes
0
replies
1.4k
views
Trying to use a NanoString expression set with batch effects to do GSVA
GSVA
Normalization
BatchEffect
GSVAdata
NanoString
3.0 years ago
Zhijie
• 0
1
vote
5
replies
2.9k
views
'combined score' calculation with singscore vs gsva
singscore
GSVA
3.2 years ago • updated 3.1 years ago
rocanja
▴ 60
5
votes
9
replies
3.1k
views
GSVA perfomed on RSEM Expected Count data
GSVA
RNA-Seq
RSEM
Expected_Count
3.4 years ago
Yang Shi
▴ 10
3
votes
4
replies
3.7k
views
Why Negative value from GSVA
GSVA
RNASeq
edgeR
3.5 years ago
Yang Shi
▴ 10
0
votes
3
replies
3.9k
views
Should 0 values for gene counts be removed prior to ssGSEA/GSVA analysis?
GSEA
GSVA
updated 3.2 years ago by
rocanja
▴ 60 • written 3.5 years ago by
João
• 0
1
vote
2
replies
1.9k
views
Can GSVA be applied in several sample type and each type only have two replicates ?
GSVA
4.3 years ago • updated 3.6 years ago
Guandong Shang
▴ 40
2
votes
2
replies
2.5k
views
How to run GSVA with partially NA genes
GSVA
3.6 years ago
blakebowen
• 0
1
vote
3
replies
11k
views
GSVA and ssGSEA output differences
enrichment
GSVA
enrichplot
ssGSEA
updated 3.7 years ago by
Robert Castelo
★ 3.4k • written 3.7 years ago by
Davide
• 0
1
vote
1
reply
2.6k
views
Cleaning GeneSets from GSEA
msigdb
GSEABase
GSVA
updated 3.8 years ago by
Robert Castelo
★ 3.4k • written 3.8 years ago by
forlani.luca
• 0
0
votes
1
reply
1.3k
views
Running PLAGE gets killed
GSVA
SingleCellData
updated 3.8 years ago by
Robert Castelo
★ 3.4k • written 3.8 years ago by
Amna
• 0
0
votes
1
reply
2.2k
views
GSVA: for a pathway, can enrichment scores of all samples be negative?
GSVAdata
GSVA
updated 3.8 years ago by
Robert Castelo
★ 3.4k • written 3.8 years ago by
random
• 0
0
votes
1
reply
2.2k
views
GSVA package normalization on gene-length ?
GSVA
updated 4.0 years ago by
Robert Castelo
★ 3.4k • written 4.0 years ago by
xanthexu
• 0
1
vote
11
replies
3.7k
views
Error in .local(expr, gset.idx.list, ...) : Please install the nnotation package hgu95a, but I can't install hgu95a
GSVA
updated 4.5 years ago by
soudayo
▴ 10 • written 5.4 years ago by
yaoxucpu
• 0
2
votes
2
replies
3.1k
views
Questions regard to GSVA and Limma
limma
GSVA
4.5 years ago
Chenxi
• 0
2
votes
2
replies
1.3k
views
Turn of GSVA filtering for method ssGSEA
GSVA
4.5 years ago
k.vitting.seerup
▴ 120
2
votes
7
replies
5.0k
views
Issue with GSVA using dgCMatrix
GSVA
updated 22 months ago by
Moritz
▴ 10 • written 4.5 years ago by
resa
• 0
0
votes
1
reply
4.8k
views
GSVA Problem
GSVA
updated 4.6 years ago by
Robert Castelo
★ 3.4k • written 4.6 years ago by
tywzlzl2011
• 0
6
votes
4
replies
2.5k
views
Discrepancy in GSVA for Nanostring when using normalized counts vs rlog as input
GSVA
4.9 years ago
hanyin.wang88
▴ 10
0
votes
8
replies
9.4k
views
GSVA Error in .mapGeneSetsToFeatures(mapped.gset.idx.list, rownames(expr))
GSVA
updated 3.3 years ago by
Robert Castelo
★ 3.4k • written 4.9 years ago by
Siyuan
• 0
2
votes
3
replies
3.1k
views
Selecting or not selecting samples before running GSVA
GSVA
updated 5.0 years ago by
Robert Castelo
★ 3.4k • written 5.0 years ago by
hsiowa2
▴ 20
0
votes
3
replies
2.4k
views
GSVA on gene sets with 2 genes
GSVA
gene sets
RNA-seq
updated 5.2 years ago by
Robert Castelo
★ 3.4k • written 5.2 years ago by
Endre Sebestyén
▴ 70
0
votes
1
reply
1.8k
views
Extract GSVA gene rank matrix
gsva
updated 5.4 years ago by
Robert Castelo
★ 3.4k • written 5.4 years ago by
dylan
• 0
2
votes
1
reply
3.5k
views
pre-filtering gene sets for GSVA/ssGSEA
gsea
ssgsea
gsva
pathways
updated 5.5 years ago by
Robert Castelo
★ 3.4k • written 5.5 years ago by
igor
▴ 50
2
votes
2
replies
2.7k
views
Using GSVA All the pathway score are same
GSVA
scRNA-seq data
updated 5.5 years ago by
Robert Castelo
★ 3.4k • written 5.5 years ago by
initialqy
• 0
2
votes
10
replies
5.4k
views
How to compare two or more GSVA outputs, when it is not possible to run GSVA at once
gsva
updated 5.5 years ago by
Robert Castelo
★ 3.4k • written 5.5 years ago by
hsiowa2
▴ 20
99 results • Page
1 of 2
Recent ...
Replies
Comment: Guitar R package requires update due to dependency GenomicFeatures
by
Frank
• 0
Created by French developer Julien "Orteil" Thiennot, Cookie Clicker transformed the gaming landscape by introducing a new genre of idle ga…
Comment: Empty boxes in treemap plot rrvgo package
by
TikTsokaasocissalpc
• 0
Clear visualization matters just as much in mobile entertainment as in data analysis. The [Try KK33 Game App now][1] focuses on clean layou…
Comment: nice 3D displays for PCA analysis
by
adam80haynes
• 0
That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
Comment: Bioinformatician at the Lausanne University Hospital
by
TikTsokaasocissalpc
• 0
The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
TikTsokaasocissalpc
• 0
If you want to share your research progress and microbiome discoveries with colleagues or friends, [snaptroid android][1] download free mak…
Votes
Error in SummarizedExperiment(assays = SimpleList(counts = countData)
Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Awards
• All
Popular Question
to
shepherl
4.2k
Popular Question
to
Gordon Smyth
53k
Popular Question
to
Hervé Pagès
16k
Popular Question
to
Vincent J. Carey, Jr.
6.7k
Popular Question
to
Istvan Albert
▴ 50
Locations
• All
Seattle, WA, United States,
1 hour ago
Canada,
2 hours ago
United States,
2 hours ago
United States,
2 hours ago
The city by the bay,
3 hours ago
Traffic: 1777 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6