Bioconductor GenomicInteractions

Showing : GenomicInteractions • reset

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662

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InteractionSet subsetByOverlaps GenomicInteractions

17 months ago LaureTomas ▴ 10

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766

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GenomicInteractions Basic4Cseq DNASeq GenomicFiles

3.5 years ago koushik • 0

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1.9k

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diffHic GenomicInteractions edgeR HiC cooler

updated 4.3 years ago by Aaron Lun ★ 28k • written 4.3 years ago by Marco Blanchette ▴ 30

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duplicate GenomicInteractions

4.6 years ago dogancan • 0

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GenomicInteractions

4.7 years ago chang.jiaming • 0

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1.4k

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GenomicInteractions gviz

updated 4.8 years ago by liz.ingsimmons ▴ 140 • written 4.8 years ago by Marco Blanchette ▴ 30

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948

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genomicInteractions annotation

updated 5.5 years ago by liz.ingsimmons ▴ 140 • written 5.5 years ago by ls760 • 0

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GenomicInteractions Gviz

updated 5.6 years ago by liz.ingsimmons ▴ 140 • written 5.6 years ago by Nik dAK ▴ 10

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genomicinteractions gviz interactionset

updated 6.0 years ago by liz.ingsimmons ▴ 140 • written 6.0 years ago by ferbecneu • 0

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1.6k

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genomicinteractions

7.3 years ago sarvesh.nikumbh ▴ 10

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3.0k

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gviz genomicinteractions

8.7 years ago enricoferrero ▴ 660

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genomicinteractions GRanges

updated 8.8 years ago by liz.ingsimmons ▴ 140 • written 8.8 years ago by tangming2005 ▴ 200

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2.3k

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GenomicInteractions

updated 9.0 years ago by Malcolm Perry ▴ 40 • written 9.0 years ago by tangming2005 ▴ 200

13 results • Page 1 of 1

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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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