Showing : Gviz • reset
1
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5
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3.4k
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plotting interactions in gviz (Chia-Pet, HiC, 5C). New feature?
gviz
updated 10.6 years ago by ▴ 750 • written 10.8 years ago by • 0
3
votes
2
replies
2.2k
views
Gviz - Arrow Head Resizing
gviz
10.6 years ago bst ▴ 10
0
votes
3
replies
1.7k
views
Gviz IdeogramTrack fails if species has no band information
gviz ideogram
updated 10.6 years ago by ★ 1.6k • written 10.6 years ago by • 0
0
votes
2
replies
1.9k
views
Show the name of genetic elements and change the color according to its feature using UcscTrack
gviz ucsc
10.7 years ago • updated 10.6 years ago Tiphaine Martin ▴ 40
0
votes
2
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2.5k
views
Gviz: Use of transcriptAnnotation in BiomartGeneRegionTrack
gviz
10.6 years ago broder.engler • 0
0
votes
1
reply
1.2k
views
Gviz: DataTrack generating non-user data points?
gviz r
updated 10.7 years ago by ★ 1.6k • written 10.7 years ago by • 0
3
votes
3
replies
2.2k
views
Gviz::IdeogramTrack() with chrM does not work
Gviz chrM
updated 10.7 years ago by ★ 1.6k • written 10.7 years ago by ★ 3.4k
0
votes
1
reply
1.3k
views
Gviz Alignments Track - read orientation
gviz
updated 10.7 years ago by ★ 1.6k • written 10.7 years ago by • 0
0
votes
6
replies
3.4k
views
Gviz::plotTracks for BiomartGeneRegionTrack() produces empty plots
gviz visualization
10.8 years ago Asta Laiho ▴ 120
0
votes
4
replies
2.3k
views
Marking and annotating several SNPs on Ideogram track by Gviz package.
gviz ideogram snps
updated 10.8 years ago by ★ 1.6k • written 10.8 years ago by • 0
0
votes
2
replies
2.7k
views
use BiomartGeneRegionTrack with the dataset grch37.ensembl.org
gviz ensembl biomart
10.9 years ago Tiphaine Martin ▴ 40
6
votes
4
replies
3.4k
views
Gviz highlighted regions displaying behind main plot
gviz software error
updated 10.9 years ago by ★ 1.6k • written 10.9 years ago by ▴ 40
0
votes
4
replies
2.6k
views
Gviz: add/change bands in ideogram
gviz
11.0 years ago • updated 10.9 years ago Ludwig Geistlinger ▴ 70
0
votes
1
reply
1.4k
views
findOverlaps error with Gviz
gviz genomicranges software error
updated 11.0 years ago by ★ 1.6k • written 11.0 years ago by ▴ 40
0
votes
4
replies
3.9k
views
'external_gene_id' error when invoking the BiomartGeneRegionTrack function
Gviz biomart
updated 11.0 years ago by ★ 1.6k • written 11.0 years ago by ▴ 10
2
votes
2
replies
2.2k
views
Gviz adding Custom Track
gviz
updated 11.0 years ago by 68k • written 11.0 years ago by ▴ 10
3
votes
1
reply
2.4k
views
Is it possible to plot a track for each read group in a bam file with gviz without splitting the bam file into saparate bams?
gviz bam
updated 11.0 years ago by 25k • written 11.0 years ago by ▴ 90
1
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1
reply
1.6k
views
Plotting arbitrary lines at Gviz plotTracks
Gviz
11.2 years ago florian.hahne@novartis.com ★ 1.6k
0
votes
0
replies
1.6k
views
Question on Gviz
Alignment Gviz
11.2 years ago florian.hahne@novartis.com ★ 1.6k
2
votes
1
reply
1.5k
views
b37 version of BSGenome for Gviz
Gviz Gviz
updated 11.2 years ago by 25k • written 11.2 years ago by ▴ 20
1
vote
2
replies
3.3k
views
"Normalising" GRanges coverage object
Coverage GO Gviz Coverage GO Gviz
updated 11.2 years ago by ★ 7.9k • written 11.2 years ago by ▴ 350
0
votes
0
replies
1.5k
views
Gviz: Plotting mean & CI for DataTrack
Annotation Visualization Gviz Annotation Visualization Gviz
11.2 years ago florian.hahne@novartis.com ★ 1.6k
1
vote
0
replies
1.0k
views
question about Gviz
Gviz Gviz
11.2 years ago florian.hahne@novartis.com ★ 1.6k
0
votes
0
replies
1.1k
views
Gviz: Plotting mean & CI for DataTrack
Annotation Visualization Gviz Annotation Visualization Gviz
11.4 years ago Shraddha Pai ▴ 80
0
votes
1
reply
984
views
Gviz Incorrect Labels on Features
Annotation Gviz Annotation Gviz
updated 11.4 years ago by ★ 1.6k • written 11.4 years ago by ▴ 130
0
votes
2
replies
1.5k
views
Gviz Incorrect Labels on Features
Annotation Gviz Annotation Gviz
updated 11.5 years ago by ★ 1.6k • written 11.5 years ago by ▴ 130
0
votes
2
replies
1.5k
views
GViz Annotation Track Stacking
Gviz Gviz
updated 11.5 years ago by ★ 1.6k • written 11.5 years ago by ▴ 130
0
votes
1
reply
3.5k
views
displaying coverage RNAseq Gviz
RNASeq Coverage Gviz RNASeq Coverage Gviz
11.5 years ago florian.hahne@novartis.com ★ 1.6k
0
votes
6
replies
3.3k
views
Displaying very deep coverage in Gviz
Coverage Gviz Coverage Gviz
updated 11.5 years ago by ★ 1.6k • written 11.5 years ago by ▴ 130
0
votes
3
replies
1.7k
views
New error in Gviz
Gviz Gviz
updated 11.5 years ago by ★ 1.6k • written 11.5 years ago by ▴ 40
0
votes
5
replies
4.2k
views
Gviz AnnotationTrack - Consistent y-scales
Coverage Annotation graph Gviz Coverage Annotation graph Gviz
updated 11.5 years ago by ▴ 130 • written 11.5 years ago by ▴ 350
0
votes
0
replies
1.3k
views
Gviz AnnotationTrack - Consistent y-scales
Coverage Gviz Coverage Gviz
11.5 years ago Lance Parsons ▴ 130
0
votes
0
replies
2.2k
views
IdeogramTrack and bigWig file errors in Gviz
GO Network rtracklayer CAMERA Gviz GO Network rtracklayer CAMERA Gviz
11.6 years ago Robert Ivanek ▴ 750
0
votes
0
replies
1.2k
views
Question on Gviz
Alignment Gviz Alignment Gviz
11.6 years ago florian.hahne@novartis.com ★ 1.6k
0
votes
1
reply
1.8k
views
fatal error when installint BioC devel on R devel
Gviz Gviz
11.7 years ago Martin Rijlaarsdam ▴ 190
0
votes
0
replies
2.3k
views
Gviz: axes related parameters
Annotation Gviz Annotation Gviz
11.7 years ago florian.hahne@novartis.com ★ 1.6k
0
votes
3
replies
2.1k
views
Gviz output extra empty page on pdf device
Gviz Gviz
updated 11.7 years ago by ★ 1.6k • written 11.7 years ago by ▴ 210
0
votes
6
replies
3.0k
views
Gviz: axes related parameters
Coverage Gviz Coverage Gviz
updated 11.7 years ago by ★ 13k • written 11.7 years ago by ▴ 170
0
votes
0
replies
1.2k
views
Question about BiomartGeneRegionTrack
Gviz Gviz
11.7 years ago florian.hahne@novartis.com ★ 1.6k
0
votes
4
replies
3.2k
views
Gviz problem to extract some track with UcscTrack like Broad ChromHMM
Gviz Gviz
11.7 years ago florian.hahne@novartis.com ★ 1.6k
0
votes
0
replies
1.2k
views
How to add labels to dots in the datatrack in Gviz?
Gviz Gviz
11.7 years ago ccshao ▴ 70
0
votes
0
replies
1.4k
views
Gviz pacakge
Annotation Gviz Annotation Gviz
11.8 years ago florian.hahne@novartis.com ★ 1.6k
0
votes
1
reply
1.1k
views
Gviz pacakge
Annotation Gviz Annotation Gviz
11.8 years ago florian.hahne@novartis.com ★ 1.6k
0
votes
2
replies
2.5k
views
Gviz - Visualize Reads - Color by Presence of Junction?
Coverage Gviz Coverage Gviz
updated 11.9 years ago by ▴ 750 • written 11.9 years ago by ▴ 120
0
votes
0
replies
1.8k
views
Gviz and Leishmania genomes
rtracklayer genomes Gviz rtracklayer genomes Gviz
12.0 years ago florian.hahne@novartis.com ★ 1.6k
5
votes
2
replies
3.5k
views
Gviz - show plus and minus strand from a bam
Sequencing Coverage Gviz Sequencing Coverage Gviz
updated 12.0 years ago by ★ 1.6k • written 12.0 years ago by ▴ 510
0
votes
1
reply
1.9k
views
IdeogramTrack and bigWig file errors in Gviz
ChIPSeq GO Network rtracklayer CAMERA chipseq Gviz ChIPSeq GO Network rtracklayer Gviz
updated 12.1 years ago by ★ 11k • written 12.1 years ago by ▴ 40
0
votes
0
replies
1.5k
views
overlay in GVIZ
Gviz Gviz
12.1 years ago florian.hahne@novartis.com ★ 1.6k
0
votes
3
replies
2.4k
views
Horizontal text in Gviz title panel.
Gviz Gviz
updated 12.1 years ago by ▴ 210 • written 12.1 years ago by ▴ 10
0
votes
0
replies
1.4k
views
Gviz - Plot genes and data from - strand (3'-5') in 5'-3' direction
Annotation Gviz Annotation Gviz
12.1 years ago Robert Ivanek ▴ 750
337 results • Page 6 of 7
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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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