Bioconductor Isoform

Showing : Isoform • reset

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3.8k

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limma isoform edgeR salmon R

updated 14 months ago by ATpoint ★ 5.0k • written 14 months ago by mohammedtoufiq91 ▴ 10

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827

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Isoform IsoformSwitchAnalyzeR

2.8 years ago Craig • 0

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1.2k

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pacbio isoform

written 3.2 years ago by lhaiyan3 • 0

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3.5k

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RNASeqData isoform DESeq2

3.8 years ago • updated 3.7 years ago priyanka.m • 0

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2.1k

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isoform RNA-seq hisat2 stringtie ballgown

5.4 years ago ra711 • 0

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2.1k

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isoform deep sequencing voom

updated 5.5 years ago by Gordon Smyth 53k • written 5.5 years ago by Ina Hoeschele ▴ 620

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1.9k

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tximport isoform voom

updated 5.6 years ago by Gordon Smyth 53k • written 5.6 years ago by Ina Hoeschele ▴ 620

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2.1k

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cancer Isoform limma IsoformSwitchAnalyzeR

updated 6.4 years ago by k.vitting.seerup ▴ 120 • written 6.4 years ago by asmita • 0

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1.7k

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gene isoform quantification rna-seq

updated 6.5 years ago by swbarnes2 ★ 1.4k • written 6.5 years ago by angel.campos • 0

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2.0k

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isoformswitchanalyzer isoform differential isoform usage

written 7.2 years ago by A ▴ 60

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1.3k

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kallisto differential isoform usage isoform

8.3 years ago ilyco • 0

11 results • Page 1 of 1

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Answer: Unable to create venndiagram using VennDiagram 1.5.1 package by kesha • 0

<a href=https://vavadacasinox.com/>vavadacasinox.com</a>

Comment: How to convert .raw data for use in xcms by a2a2asawhaa • 0

try converting your files to the older mzXML format, which remains highly stable for XCMS. While waiting for large datasets to process, you…

Comment: Which preprocessing steps are needed before running limpa? by miro165sabo • 0

Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Votes

A: Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE metho

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Which preprocessing steps are needed before running limpa?

Awards • All

Scholar to Gordon Smyth 53k

Popular Question to Peter Hickey ▴ 760