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tximport ERROR : all(file.exists(files)) is not TRUE
Linux
R
tximport
3.0 years ago
nakane_clan
• 0
0
votes
4
replies
5.3k
views
Problems Installing biomaRt
biomart
linux
updated 4.2 years ago by
Martin Morgan
25k • written 6.8 years ago by
christopher.mcfall
• 0
1
vote
6
replies
1.6k
views
How to install DEXSeq on R 3.4.4
DEXSEq
Linux
updated 5.8 years ago by
Alejandro Reyes
★ 1.9k • written 5.8 years ago by
justinkablan225
▴ 10
0
votes
1
reply
1.3k
views
ChemmineOB Installation RHEL
ChemmineOB
Linux
Installation
5.9 years ago
jandrosavich
• 0
0
votes
2
replies
6.2k
views
[Resolved] RcppArmadillo pckg ERRORS : non-zero exit status (and so DESeq2 also)
DESEq2
R
linux
RcppArmadillo
6.0 years ago
RS1
• 0
0
votes
0
replies
1.2k
views
Job:
Bioinformatician ('CHBIO15) (m/f)
bioinformatician job
Linux
NGS
Job
6.2 years ago
l.brown
▴ 10
0
votes
0
replies
1.4k
views
Job:
Bioinformatics Engineer / Data Analyst
python
bio
ngs
linux
Job
6.9 years ago
EMBL Recruitment
• 0
1
vote
0
replies
1.7k
views
Problems running oligo functions in parallel on a linux computer
biocparallel
oligo
rma
linux
parallel
7.2 years ago
s.munster
▴ 40
0
votes
1
reply
1.6k
views
rhdf5 h5ls output differs from Linux to Windows
R
h5ls
windows
linux
updated 7.3 years ago by
Mike Smith
★ 6.6k • written 7.4 years ago by
maxime.fortin
• 0
1
vote
4
replies
2.4k
views
Rsubread install problems on CentOS 6.8/R3.4.1/gcc/4.8.2
linux
rsubread
installation
updated 7.6 years ago by
Mike Smith
★ 6.6k • written 7.6 years ago by
hjmangalam
• 0
0
votes
6
replies
2.6k
views
Chipseeker is unavabile on Linux CentOS7 ?
Bioconduct or
Chipseeker
CentOS7
Linux
installation
updated 8.3 years ago by
Guangchuang Yu
★ 1.2k • written 8.3 years ago by
spsp9987
• 0
0
votes
4
replies
3.2k
views
Unable to install Rcpp package for genefo
Rcpp
genefo
linux
linux mint
Rstudio
updated 8.5 years ago by
mfox
• 0 • written 8.5 years ago by
anjali.krishna1008
• 0
0
votes
1
reply
1.5k
views
R slow, using all physical memory and 20GB Virt
linux
r
phylogenetic
computational biology
updated 9.6 years ago by
Hervé Pagès
16k • written 9.6 years ago by
guilherme
• 0
3
votes
1
reply
1.4k
views
best server maintenance practices
linux
R
server
updated 10.4 years ago by
James W. MacDonald
68k • written 10.4 years ago by
Matthew McCormack
▴ 180
14 results • Page
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Answer: To count or not to count multi-overlapping reads?
by
Gordon Smyth
52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2?
by
ATpoint
★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2?
by
Wolfgang Huber
★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Comment: How to visualize these pathways using pathview
by
ingrid.h
• 0
Yes I have seen it, thanks.
Comment: Store Matrix in DataFrame Cell
by
Dario Strbenac
★ 1.6k
It does not appear to work. > DataFrame(name = "test", value = list(matrix(1:4, ncol = 2))) DataFrame with 2 rows and 3 columns …
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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