Bioconductor MethylationArray

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MethylationArray methylationArrayAnalysis MethylationArrayData meffil methylation

updated 4 hours ago by James W. MacDonald 65k • written 8 hours ago by kyj2226 • 0

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336

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limma DMRcate MethylationArray EPICV2

updated 3 days ago by Gordon Smyth 50k • written 3 days ago by Kim • 0

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236

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GenomeWideAssociation SequenceAnnotation MethylationArray GenomicDistributionsData

6 days ago • updated 5 days ago Yveto • 0

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154

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MethylationArray normalize450K TCGAbiolinks Normalization MethylationArrayData

9 weeks ago • updated 7 weeks ago Giovanni Calice ▴ 160

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263

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DNAMethylation GO MethylationArray missMethyl EPICv2

updated 9 weeks ago by belinda.phipson ▴ 40 • written 9 weeks ago by s.malik • 0

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743

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edgeR MethylationArray

updated 9 weeks ago by Gordon Smyth 50k • written 10 weeks ago by mico • 0

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177

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TCGAMethylation450k MethylationArray TCGAbiolinks Tcga TCGAbiolinksGUI.data

10 weeks ago BioinfoMug • 0

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495

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edgeR MethylationArray

10 weeks ago mico • 0

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300

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MethylationArray methylationArrayAnalysis ChAMP

updated 10 weeks ago by James W. MacDonald 65k • written 10 weeks ago by david.cheishvili • 0

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463

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minfi MethylationArray

updated 11 weeks ago by James W. MacDonald 65k • written 12 weeks ago by sharangiiv • 0

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328

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edgeR MethylationArray

3 months ago • updated 12 weeks ago mico • 0

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474

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DNAMethylation MethylationArray methylationArrayAnalysis illumina

3 months ago mikat • 0

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745

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MethylationArray methylationArrayAnalysis

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by henry-keen • 0

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802

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linearregression epicarray MethylationArray limma

8 months ago Jitendra ▴ 10

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2.4k

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MethylationArray methylationArrayAnalysis ChAMP

updated 6 months ago by dorota.komar • 0 • written 3.4 years ago by Ankit ▴ 20

15 results • Page 1 of 1

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Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k

I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?

Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k

If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…

Comment: Memory errors using read.bismark? by Juan Higareda • 0

Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…

Answer: meffil.snp.concordance by James W. MacDonald 65k

This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…

Answer: minfi latest update for EPIC V2 chip by James W. MacDonald 65k

Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…

Votes

Answer: How to save the DEXSeq results

Answer: minfi support of illumina Infinium methylationEPIC v2.0

Comment: minfi support of illumina Infinium methylationEPIC v2.0

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Help with running egsea()

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