Showing : MethylationArrayData • reset
0
votes
1
reply
711
views
Mismatch between Illumina Mouse Methylation BeadChip annotation and genome browsers (UCSC/Ensembl)
methylationArrayAnalysis MethylationArrayData
updated 8 months ago by 68k • written 8 months ago by • 0
0
votes
1
reply
479
views
Conumee for EPIC and EPICv2 copy number
conumee CopyNumberVariation MethylationArrayData
8 months ago Adam • 0
0
votes
0
replies
347
views
Methylation data - different probes are classified differently based on transcript? (Illumina methylation arrays, using minfi)
minf minfiDataEPIC MethylationArrayData MethylationArray EPICv2manifest
9 months ago charlie.wright • 0
0
votes
2
replies
524
views
Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes))
methylationArrayAnalysis Normalization Epigenetics MethylationArrayData
9 months ago a.alkema • 0
0
votes
1
reply
370
views
Unable to find sample sheet file for ChAMP methylation data analysis
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 10 months ago by 68k • written 10 months ago by • 0
0
votes
1
reply
697
views
Annotating DMRs
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 14 months ago by 68k • written 14 months ago by ▴ 10
0
votes
0
replies
614
views
TCGAbiolinks STAD project 450k Methylation Beta Value data
MethylationArray normalize450K TCGAbiolinks Normalization MethylationArrayData
20 months ago Giovanni Calice ▴ 160
0
votes
0
replies
1.2k
views
Normalization in methylation analysis
Methylation minfi preprocessQuantile MethylationArrayData preprocessFunnorm
23 months ago kyj2226 • 0
3
votes
6
replies
1.6k
views
Methylation data analysis
MethylationArrayData methylationArrayAnalysis
2.0 years ago aldea85 • 0
1
vote
3
replies
1.3k
views
Merging Methylation data (M-values) with phenotypic data
MethylationArrayData methylationArrayAnalysis
updated 2.3 years ago by 68k • written 2.3 years ago by • 0
0
votes
1
reply
1.1k
views
Read methylation data from tar files on GEO (GSE73303)
GeneExpression Bioconductor GEOquery MethylationArrayData
2.3 years ago Arianna • 0
1
vote
2
replies
1.4k
views
How to perform a methylation analyisis from m values
MethylationArrayData methylationArrayAnalysis
2.5 years ago Irene • 0
1
vote
1
reply
1.0k
views
urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 2.6 years ago by ▴ 40 • written 2.6 years ago by • 0
2
votes
6
replies
1.9k
views
cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 2.6 years ago by ▴ 230 • written 2.6 years ago by • 0
0
votes
1
reply
1.1k
views
LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray
updated 2.6 years ago by 53k • written 2.7 years ago by • 0
0
votes
4
replies
2.0k
views
Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
updated 2.7 years ago by 68k • written 2.7 years ago by • 0
0
votes
5
replies
2.3k
views
minfi error read.metharray.exp
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
written 2.7 years ago by • 0
0
votes
2
replies
2.5k
views
ChAMP package:Error in cmdscale(d) : 'k' must be in {1, 2, .. n - 1}
MethylationArrayData
3.1 years ago shuangshuang • 0
2
votes
2
replies
1.9k
views
Limma vs. lm for methylation data
limma MethylationArrayData MethylationArray
3.6 years ago fluentin44 • 0
0
votes
0
replies
1.1k
views
filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
3.7 years ago Jitendra ▴ 10
0
votes
0
replies
1.3k
views
Problem loading Red channel idat files with champ.load
R MethylationArrayData ChAMP
4.0 years ago Paulina • 0
0
votes
0
replies
1.2k
views
DNA methylation EPIC array and ChromHMM
chromhmmData MethylationArrayData
4.3 years ago macsue.jacques ▴ 10
0
votes
0
replies
1.2k
views
minfi - estimateCellCounts2-proportions sum more than 1
minfi minfiData MethylationArrayData
4.3 years ago ponche_de_kiwi • 0
0
votes
6
replies
4.8k
views
Merge problems in R
methylationArrayAnalysis ChAMP MethylationArrayData
4.4 years ago FWNL15 • 0
0
votes
1
reply
1.3k
views
Error in reading metharray sheet
DifferentialMethylation MethylationArrayData
updated 4.5 years ago by ▴ 780 • written 4.5 years ago by • 0
0
votes
0
replies
1.6k
views
How to get illumina CpG IDs by gene name?
MethylationArrayData RnBeads
4.7 years ago D ▴ 10
1
vote
4
replies
3.8k
views
Unable to read in the IDAT files using read.metharray.exp()
MethylationArrayData methy Bioconductor minfi
4.8 years ago shweta • 0
1
vote
1
reply
3.3k
views
DMR Plot
dmr MethylationArrayData DMRcatedata
updated 5.0 years ago by 68k • written 5.1 years ago by • 0
28 results • Page 1 of 1
Recent ...
Replies
Comment: gene Set with high AUC score but no cells assigned to cell type by gogeni5529 • 0
THIS is spam. How Do I delete it?
Comment: limpa - drivers for unusually high standard error? by Julia Broadbent • 0
Apologies for not being clearer in my initial question, but thank you for answering regardless! The large SE values I am looking at appear …
Answer: limpa - drivers for unusually high standard error? by Gordon Smyth 53k
Hi Julia, I am going to assume that you mean standard errors (SEs) returned by `dpcQuant()`, because later stages in the limpa pipeline do…
Answer: How can I correctly use phyloseq with Docker? by Kevin Blighe ★ 4.0k
The Bioconductor version must be compatible with the R version. Bioconductor version 3.18 is compatible with R version 4.3. The Dockerfile …
Answer: Boolean Gate Combination for Any 2 Positive Events in flowWorkspace by Kevin Blighe ★ 4.0k
Your proposed code is correct and will achieve the desired outcome. The boolean filter expression `IFNg & TNFa | IFNg & IL2 | TNFa & IL2` i…
Votes
Answer: gene Set with high AUC score but no cells assigned to cell type
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Awards • All
Popular Question to shepherl 4.2k
Popular Question to Gordon Smyth 53k
Supporter to fabio.marroni • 0
Popular Question to Guido Hooiveld ★ 4.1k
Popular Question to James W. MacDonald 68k
Locations • All
United States, 7 minutes ago
The city by the bay, 17 minutes ago
The Netherlands, 37 minutes ago
United States, 1 hour ago
United States, 3 hours ago
Traffic: 862 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6