Showing : MethylationArrayData • reset
0
votes
1
reply
198
views
Conumee for EPIC and EPICv2 copy number
conumee CopyNumberVariation MethylationArrayData
26 days ago • updated 25 days ago Adam • 0
0
votes
0
replies
210
views
Methylation data - different probes are classified differently based on transcript? (Illumina methylation arrays, using minfi)
minf minfiDataEPIC MethylationArrayData MethylationArray EPICv2manifest
6 weeks ago charlie.wright • 0
0
votes
2
replies
312
views
Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes))
methylationArrayAnalysis Normalization Epigenetics MethylationArrayData
7 weeks ago • updated 6 weeks ago a.alkema • 0
0
votes
1
reply
191
views
Unable to find sample sheet file for ChAMP methylation data analysis
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 8 weeks ago by 68k • written 8 weeks ago by • 0
0
votes
1
reply
445
views
Annotating DMRs
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 6 months ago by 68k • written 6 months ago by ▴ 10
0
votes
0
replies
468
views
TCGAbiolinks STAD project 450k Methylation Beta Value data
MethylationArray normalize450K TCGAbiolinks Normalization MethylationArrayData
12 months ago Giovanni Calice ▴ 160
0
votes
0
replies
862
views
Normalization in methylation analysis
Methylation minfi preprocessQuantile MethylationArrayData preprocessFunnorm
15 months ago kyj2226 • 0
3
votes
6
replies
1.3k
views
Methylation data analysis
MethylationArrayData methylationArrayAnalysis
16 months ago aldea85 • 0
1
vote
3
replies
1.0k
views
Merging Methylation data (M-values) with phenotypic data
MethylationArrayData methylationArrayAnalysis
updated 19 months ago by 68k • written 19 months ago by • 0
0
votes
1
reply
854
views
Read methylation data from tar files on GEO (GSE73303)
GeneExpression Bioconductor GEOquery MethylationArrayData
20 months ago Arianna • 0
1
vote
2
replies
1.2k
views
How to perform a methylation analyisis from m values
MethylationArrayData methylationArrayAnalysis
21 months ago Irene • 0
1
vote
1
reply
864
views
urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 23 months ago by ▴ 40 • written 23 months ago by • 0
2
votes
6
replies
1.6k
views
cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 23 months ago by ▴ 230 • written 23 months ago by • 0
0
votes
1
reply
867
views
LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray
updated 24 months ago by 52k • written 24 months ago by • 0
0
votes
4
replies
1.6k
views
Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
updated 2.0 years ago by 68k • written 2.0 years ago by • 0
0
votes
5
replies
1.9k
views
minfi error read.metharray.exp
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
written 2.1 years ago by • 0
0
votes
2
replies
2.2k
views
ChAMP package:Error in cmdscale(d) : 'k' must be in {1, 2, .. n - 1}
MethylationArrayData
2.4 years ago shuangshuang • 0
2
votes
2
replies
1.7k
views
Limma vs. lm for methylation data
limma MethylationArrayData MethylationArray
3.0 years ago • updated 2.9 years ago fluentin44 • 0
0
votes
0
replies
971
views
filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
3.0 years ago Jitendra ▴ 10
0
votes
0
replies
1.1k
views
Problem loading Red channel idat files with champ.load
R MethylationArrayData ChAMP
3.3 years ago Paulina • 0
0
votes
0
replies
1.1k
views
DNA methylation EPIC array and ChromHMM
chromhmmData MethylationArrayData
3.6 years ago macsue.jacques ▴ 10
0
votes
0
replies
1.1k
views
minfi - estimateCellCounts2-proportions sum more than 1
minfi minfiData MethylationArrayData
3.6 years ago ponche_de_kiwi • 0
0
votes
6
replies
4.3k
views
Merge problems in R
methylationArrayAnalysis ChAMP MethylationArrayData
3.7 years ago FWNL15 • 0
0
votes
1
reply
1.1k
views
Error in reading metharray sheet
DifferentialMethylation MethylationArrayData
updated 3.8 years ago by ▴ 780 • written 3.8 years ago by • 0
0
votes
0
replies
1.4k
views
How to get illumina CpG IDs by gene name?
MethylationArrayData RnBeads
4.1 years ago D ▴ 10
1
vote
4
replies
3.5k
views
Unable to read in the IDAT files using read.metharray.exp()
MethylationArrayData methy Bioconductor minfi
4.1 years ago shweta • 0
1
vote
1
reply
3.0k
views
DMR Plot
dmr MethylationArrayData DMRcatedata
updated 4.4 years ago by 68k • written 4.4 years ago by • 0
27 results • Page 1 of 1
Recent ...
Replies
Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k
We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…
Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k
It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…
Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Benjamin ▴ 20
I have received a response from Ensembl regarding the items I have listed above. I wanted to post it here and will continue to post update…
Answer: Error in cnetplot by Guido Hooiveld ★ 4.1k
Unfortunately you did not show how you generated your input data (the object `enrichment`), nor did you show the output from `sessionInfo()…
Answer: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k
I think this is because Ensembl can assign different Gene IDs to "the same gene" if it is found both on a standard chromosome and a scaffol…
Votes
Answer: Merging annotation with differential expression output
Answer: Explannation for ROAST results
Comment: Limma comparing gene expression between base line and one treatment
Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
clusterProfiler-GO enrichment Error
Awards • All
Popular Question to Gordon Smyth 52k
Popular Question to mdeea123 ▴ 10
Popular Question to GA ▴ 10
Popular Question to Elizabeth • 0
Popular Question to Kent • 0
Locations • All
United States, 11 minutes ago
Qatar, 30 minutes ago
Denmark, 1 hour ago
United States, 1 hour ago
Japan, 1 hour ago
Traffic: 679 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6