Showing : MethylationArrayData • reset
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3
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549
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Merging Methylation data (M-values) with phenotypic data
MethylationArrayData methylationArrayAnalysis
updated 9 months ago by 65k • written 9 months ago by • 0
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4
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2.7k
views
Unable to read in the IDAT files using read.metharray.exp()
MethylationArrayData methy Bioconductor minfi
3.3 years ago • updated 3.2 years ago shweta • 0
1
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1
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1.8k
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DMR Plot
dmr MethylationArrayData DMRcatedata
updated 3.5 years ago by 65k • written 3.5 years ago by • 0
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1
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497
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Read methylation data from tar files on GEO (GSE73303)
GeneExpression Bioconductor GEOquery MethylationArrayData
10 months ago Arianna • 0
3
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6
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726
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Methylation data analysis
MethylationArrayData methylationArrayAnalysis
6 months ago aldea85 • 0
1
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1
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577
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urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 12 months ago by ▴ 40 • written 12 months ago by • 0
0
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1
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922
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Error in reading metharray sheet
DifferentialMethylation MethylationArrayData
updated 3.0 years ago by ▴ 780 • written 3.0 years ago by • 0
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2
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1.4k
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ChAMP package:Error in cmdscale(d) : 'k' must be in {1, 2, .. n - 1}
MethylationArrayData
19 months ago • updated 18 months ago shuangshuang • 0
0
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5
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1.2k
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minfi error read.metharray.exp
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
written 14 months ago by • 0
0
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1
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561
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LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray
updated 13 months ago by 50k • written 13 months ago by • 0
0
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4
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1.0k
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Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
updated 14 months ago by 65k • written 14 months ago by • 0
1
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2
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674
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How to perform a methylation analyisis from m values
MethylationArrayData methylationArrayAnalysis
11 months ago Irene • 0
2
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2
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1.2k
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Limma vs. lm for methylation data
limma MethylationArrayData MethylationArray
2.1 years ago fluentin44 • 0
2
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6
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1.1k
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cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 13 months ago by ▴ 180 • written 13 months ago by • 0
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0
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743
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filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
2.1 years ago Jitendra ▴ 10
0
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0
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755
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minfi - estimateCellCounts2-proportions sum more than 1
minfi minfiData MethylationArrayData
2.8 years ago ponche_de_kiwi • 0
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0
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847
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Problem loading Red channel idat files with champ.load
R MethylationArrayData ChAMP
2.5 years ago Paulina • 0
0
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0
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172
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TCGAbiolinks STAD project 450k Methylation Beta Value data
MethylationArray normalize450K TCGAbiolinks Normalization MethylationArrayData
10 weeks ago • updated 8 weeks ago Giovanni Calice ▴ 160
0
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0
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1.0k
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How to get illumina CpG IDs by gene name?
MethylationArrayData RnBeads
3.2 years ago D ▴ 10
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0
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734
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DNA methylation EPIC array and ChromHMM
chromhmmData MethylationArrayData
2.7 years ago macsue.jacques ▴ 10
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0
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275
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Normalization in methylation analysis
Methylation minfi preprocessQuantile MethylationArrayData preprocessFunnorm
5 months ago kyj2226 • 0
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6
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3.4k
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Merge problems in R
methylationArrayAnalysis ChAMP MethylationArrayData
2.8 years ago FWNL15 • 0
22 results • Page 1 of 1
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Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 65k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat by James W. MacDonald 65k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 65k
In that case, probably easiest to subset to the groups being compared.
Comment: Help with ENmix readidat by minardsmitha ▴ 10
Did you figure this out? I have the same issue.
Comment: LRT, more than two conditions and pairwise comparisons by boczniak767 ▴ 720
Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …
Votes
Comment: DESeq2- Mysterious interaction suppresses DEGs
Answer: DESeq2- Mysterious interaction suppresses DEGs
Answer: Subsetting RNAseq data | voomaByGroup()
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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