Showing : Minfi • reset
0
votes
14
replies
1.9k
views
Error while preprocessing raw data from methylation array using minfi package
minfi
updated 3 months ago by • 0 • written 8 months ago by • 0
0
votes
11
replies
3.8k
views
bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype arguments
DMRcate minfi
updated 3 months ago by ▴ 180 • written 7.1 years ago by ★ 2.0k
0
votes
9
replies
3.1k
views
clarification about bumphunter value output
minfi bumphunter
updated 11 months ago by • 0 • written 6.2 years ago by • 0
0
votes
7
replies
467
views
error in reading idat files and creating rgset
minfi MethylationArray
updated 12 weeks ago by 65k • written 12 weeks ago by • 0
2
votes
6
replies
1.4k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP DMRcate minfi
updated 5 weeks ago by ▴ 180 • written 5 months ago by ▴ 10
0
votes
5
replies
935
views
minfi, limma, adjusting for cell counts - integrating the resoults of estimateCellCounts into the linear regression model
minfi limma
6 months ago dorota.komar • 0
6
votes
5
replies
6.0k
views
minfi support of illumina Infinium methylationEPIC v2.0
methylationEPICv2.0 minfi
updated 6 months ago by ▴ 10 • written 13 months ago by ▴ 50
0
votes
4
replies
251
views
Minfi - estimatecellscount
min minfi
updated 10 days ago by 65k • written 5 weeks ago by • 0
1
vote
4
replies
211
views
minfi::read.metharray.exp
minfiData minfi
updated 15 days ago by ▴ 780 • written 16 days ago by • 0
0
votes
3
replies
950
views
Batch correction using control probes in EPIC array data
RnBeads minfiData minfi EPICarray
updated 11 months ago by ▴ 780 • written 12 months ago by ▴ 10
0
votes
3
replies
570
views
minfi bumphunter - probe IDs
minfi bumphunter
updated 7 months ago by ▴ 780 • written 7 months ago by • 0
0
votes
2
replies
1.4k
views
Error processing Infinium 450K Methylation data using Minfi
minfi software error methylation illumina450k
updated 11 months ago by • 0 • written 8.4 years ago by • 0
0
votes
2
replies
576
views
ageData (minfi pipeline)
ageData missMethyl differentialvariability minfi
updated 6 weeks ago by • 0 • written 12 months ago by • 0
0
votes
2
replies
675
views
minfi differential methylation analysis errors
minfi
6 months ago matthew.sinton • 0
0
votes
2
replies
560
views
EPIC array hg38 annotation?
minfi DMRcate
3 months ago • updated 12 weeks ago mycetes • 0
3
votes
2
replies
467
views
What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)"?
SBE CpG minfi CpGinterrogation
5 months ago • updated 4 months ago kyj2226 • 0
0
votes
1
reply
401
views
Two EPIC Methylation Array Analysis Questions
minfiDataEPIC minfi
updated 8 months ago by 65k • written 8 months ago by • 0
0
votes
1
reply
184
views
Matrix multiplication error to estimate telomere length
methylclockData minfi methylclock minfidata
updated 10 weeks ago by 65k • written 10 weeks ago by • 0
0
votes
1
reply
333
views
Error in reading my csv file in minfi
minfiDataEPIC minfi
updated 5 months ago by ▴ 780 • written 5 months ago by • 0
1
vote
1
reply
86
views
minfi latest update for EPIC V2 chip
minfi minfiDataEPIC
updated 2 days ago by 65k • written 2 days ago by • 0
0
votes
0
replies
265
views
Normalization in methylation analysis
Methylation minfi preprocessQuantile MethylationArrayData preprocessFunnorm
4 months ago kyj2226 • 0
0
votes
0
replies
201
views
Can MethylationEPIC v1 and v2 data be used together for analysis with minfi?
minfi minfiDataEPIC
8 weeks ago Felix • 0
22 results • Page 1 of 1
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Comment: DSS CpG coverage threshold by j.gilbert • 0
Might be a bit late for the original poster :') but in case anyone else is wondering, the DSS user guide says: *Q: Do I need to filter out…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Segmentation is of the whole genome, I'll write some code for doing this later today.
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
I'll take a look later. For next time, I've edited your post by enclosing the code in triple backticks (on their own link). This properly …
Comment: deseq2 results by sajadahmad41454 • 0
could you please tell me if the results are fine or not? ![pca summary][1] ![pca plot][2] [1]: /media/images/ee7d8693-bcbe-4a7a-a566-d3…
Answer: normalization using Deseq2 by ATpoint ★ 4.1k
counts(dds, normalized=TRUE)
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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