Bioconductor Noiseq

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NOISeq withoutreplicate Noiseq

updated 2.2 years ago by ATpoint ★ 5.0k • written 2.2 years ago by Rutuja • 0

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1.1k

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RNAseq RNASeqData NOISeq

3.4 years ago • updated 3.3 years ago Pratibha ▴ 10

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1.3k

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DESeq2 NOISeq edgeR

updated 4.8 years ago by ATpoint ★ 5.0k • written 4.8 years ago by Themis • 0

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2.6k

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deseq2 noiseq lowcounts rnaseq

updated 3.8 years ago by Michael Love 43k • written 5.1 years ago by andreia ▴ 10

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1.2k

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noiseq RNA-seq quality control

updated 17 months ago by baptiste.bidon • 0 • written 6.2 years ago by Arindam ▴ 80

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946

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software error NOISeq

6.3 years ago jledmondson • 0

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1.2k

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noiseq rsubread tophat bowtie bowtie2

6.4 years ago Marcelo Laia ▴ 450

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noiseq logfoldchange

7.5 years ago Aurora ▴ 20

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1.3k

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R noiseq data.frame

7.7 years ago aokoro • 0

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2.1k

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complexheatmap Rstudio NOISeq

8.1 years ago Luiz • 0

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1.9k

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rnaseq de analysis gene filtering noiseq

updated 8.2 years ago by James W. MacDonald 68k • written 8.2 years ago by Mau ▴ 50

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deseq2 cqn noiseq

updated 8.5 years ago by Michael Love 43k • written 8.5 years ago by glmazzo ▴ 10

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noiseq batch effect ARSyNseq

10.0 years ago lina.faller ▴ 10

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1.3k

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RNASeq NOISeq RNASeq NOISeq

12.6 years ago Guest User ★ 13k

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3.2k

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NOISeq NOISeq

updated 13.0 years ago by Dan Tenenbaum ★ 8.2k • written 13.0 years ago by Guest User ★ 13k

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NOISeq NOISeq

updated 13.0 years ago by Sean Davis 21k • written 13.0 years ago by Fatemehsadat Seyednasrollah ▴ 260

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1.4k

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NOISeq NOISeq

13.6 years ago Guest User ★ 13k

17 results • Page 1 of 1

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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…

Comment: Join BOC Sciences at Drug Discovery Chemistry by teamardigen • 0

Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

Was anyone else able to put the pieces together using the reply above? I read in one 10X sample using DropletUtils::read10xCounts() and thi…

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Drug datasets for RNA-seq

Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Answer: DESeq2 design for haplotype MPRA

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