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Noiseq
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Inquiring about Comparative Analysis without Replicates in NOIseq R Package
NOISeq
withoutreplicate
Noiseq
updated 20 months ago by
ATpoint
★ 4.8k • written 20 months ago by
Rutuja
• 0
1
vote
1
reply
1.0k
views
NOIseq Probability column
RNAseq
RNASeqData
NOISeq
2.8 years ago
Pratibha
▴ 10
0
votes
2
replies
1.1k
views
Differential expression on RNAseq without replicates
DESeq2
NOISeq
edgeR
updated 4.3 years ago by
ATpoint
★ 4.8k • written 4.3 years ago by
Themis
• 0
3
votes
6
replies
2.3k
views
deseq2 + filtering low counts with noiseq function
deseq2
noiseq
lowcounts
rnaseq
updated 3.2 years ago by
Michael Love
43k • written 4.5 years ago by
andreia
▴ 10
0
votes
1
reply
1.0k
views
How to arrange multiple plots into one page in NOISeq?
noiseq
RNA-seq
quality control
updated 10 months ago by
baptiste.bidon
• 0 • written 5.6 years ago by
Arindam
▴ 80
0
votes
0
replies
855
views
NOISeq 'readData' not writing correctly
software error
NOISeq
5.7 years ago
jledmondson
• 0
0
votes
1
reply
1.1k
views
Is possible to use NOISeq with counts from RSubread?
noiseq
rsubread
tophat
bowtie
bowtie2
5.8 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
1.2k
views
Noiseqbio function (NOISEQ package)
noiseq
logfoldchange
7.0 years ago
Aurora
▴ 20
0
votes
0
replies
1.2k
views
NOISeq: Need help with my data frame
R
noiseq
data.frame
7.2 years ago
aokoro
• 0
0
votes
0
replies
1.9k
views
Problem with heatmap by ComplexHeatmap
complexheatmap
Rstudio
NOISeq
7.5 years ago
Luiz
• 0
0
votes
3
replies
1.7k
views
Is the CPM filtering method from NOISeq unsupervised?
rnaseq
de analysis
gene filtering
noiseq
updated 7.6 years ago by
James W. MacDonald
68k • written 7.6 years ago by
Mau
▴ 50
0
votes
5
replies
4.4k
views
GC content and length bias correction with DESeq2 using cqn normalization factor matrix
deseq2
cqn
noiseq
updated 7.9 years ago by
Michael Love
43k • written 7.9 years ago by
glmazzo
▴ 10
0
votes
0
replies
1.4k
views
NOISeq error message while using ARSyNseq batch correction function
noiseq
batch effect
ARSyNseq
9.4 years ago
lina.faller
▴ 10
0
votes
0
replies
1.2k
views
Question: type of NOISeq package input file
RNASeq
NOISeq
RNASeq
NOISeq
12.1 years ago
Guest User
★ 13k
0
votes
2
replies
3.0k
views
NOISeq initialization problem
NOISeq
NOISeq
updated 12.5 years ago by
Dan Tenenbaum
★ 8.2k • written 12.5 years ago by
Guest User
★ 13k
0
votes
4
replies
2.3k
views
NOISeq installation error
NOISeq
NOISeq
updated 12.5 years ago by
Sean Davis
21k • written 12.5 years ago by
Fatemehsadat Seyednasrollah
▴ 260
0
votes
0
replies
1.3k
views
NOISeq-real input parameters
NOISeq
NOISeq
13.0 years ago
Guest User
★ 13k
17 results • Page
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Replies
Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran
by
Aaron Lun
★ 28k
It's calling C++ code, see the relevant function definitions on [GitHub](https://github.com/knncolle/BiocNeighbors/blob/master/src/generics…
Answer: DESeq2
by
ATpoint
★ 4.8k
Time courses are often inevitable batches but you should have done the library prep at the same day, just extract RNA per day. If not then …
Comment: Package developing and interoperation with Bioconductor
by
slizchap
• 0
Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.
Comment: Package developing and interoperation with Bioconductor
by
slizchap
• 0
Thank you so much for your answer, very useful!
Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files
by
Mike Smith
★ 6.6k
Tricky to try and debug this without some example files to work with. Can you provide the output of `traceback()` called immediately after…
Votes
Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?
Answer: Is it possible to speed up VariantAnnotation's rowRanges function when convertin
Comment: ComBat with repeated measures
Answer: Package developing and interoperation with Bioconductor
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
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