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PCAtools
•
reset
5
votes
6
replies
2.5k
views
Large difference in PCA plot based on LCPM (log counts per million) and VST (variance stabilizing transformations)
PCAtools
edgeR
pcaExplorer
RNASeq
RNAseq123
2.1 years ago
Alan
• 0
4
votes
8
replies
3.6k
views
Interpreting ellipses in PCAtools for bulk RNAseq
ellipse
RNAseq
PCAtools
updated 13 months ago by
CP
• 0 • written 3.0 years ago by
elizabethe819
• 0
3
votes
5
replies
395
views
Differing results from plotMDS and PCAtools
edgeR
PCAtools
updated 5 weeks ago by
Gordon Smyth
50k • written 6 weeks ago by
Fabian
• 0
3
votes
15
replies
3.2k
views
How to ellipse a subset of data PCA biplot?
biplot
PCA
RNASeq
PCAtools
updated 3.4 years ago by
Kevin Blighe
★ 3.9k • written 3.4 years ago by
mschmidt
▴ 10
3
votes
3
replies
2.6k
views
PCAtools - change colour of points
PCAtools
updated 3.3 years ago by
Kevin Blighe
★ 3.9k • written 3.3 years ago by
Terra
• 0
3
votes
2
replies
845
views
PCAtools lables missing or out of the plot
PCAtools
3.1 years ago
luca.s
▴ 50
2
votes
4
replies
1.6k
views
Comparing discrete variable to PCA
EDA
pcaExplorer
PCAtools
PCA
updated 2.4 years ago by
Miguel
▴ 10 • written 3.7 years ago by
k.vitting.seerup
▴ 120
1
vote
3
replies
1.4k
views
PCATools: is it possible to output a single legend when using pairsplot()?
PCATools
updated 3.6 years ago by
Kevin Blighe
★ 3.9k • written 3.6 years ago by
oakhamwolf
• 0
1
vote
1
reply
966
views
PCA input data from DRAGEN RNA pipeline
illumina
PCAtools
PCA
updated 18 months ago by
Kevin Blighe
★ 3.9k • written 18 months ago by
ilaria.debenedictis
• 0
1
vote
3
replies
1.2k
views
Adding ellipse in PCAtools biplot
Biplot
FactoMineR
proteomics
PCAtools
ellipse
updated 15 months ago by
Kevin Blighe
★ 3.9k • written 15 months ago by
M Tuhin
• 0
0
votes
1
reply
1.8k
views
Perform a biplot from pcaData and coldata in DESeq2, maybe PCAtools?
PCAtools
biplot
DESeq2
RNASeq
PCA
updated 3.5 years ago by
Kevin Blighe
★ 3.9k • written 3.5 years ago by
ecg1g15
▴ 20
0
votes
8
replies
361
views
DESeq2 output used for PCA plot on R studio
DESeq2
RSTUDIO
PCAtools
updated 15 days ago by
swbarnes2
★ 1.4k • written 17 days ago by
Aaliya
• 0
0
votes
2
replies
216
views
PCA plot suggestions
DESeq2
PCAtools
updated 14 days ago by
Michael Love
42k • written 15 days ago by
Aaliya
• 0
0
votes
1
reply
868
views
Attempt to install bioconductor 3.15, PCAtools
PCAtools
bioconductor
updated 21 months ago by
James W. MacDonald
65k • written 21 months ago by
pterry
• 0
0
votes
3
replies
1.2k
views
I got error when visualizing my PCA
PCAtools
pcaExplorer
pcaMethods
updated 22 months ago by
Federico Marini
▴ 150 • written 22 months ago by
m610110001
• 0
15 results • Page
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Replies
Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Comment: error
by
NATASHA
• 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Comment: How to use spike-in information (sequences from another species) with DESeq2::DE
by
maria.soler
• 0
Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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